Table 6.
Evaluation of accuracy of selected markers in detecting trait phenotype
| Marker | Zygote | Associated trait | EXS | EVS | ||
|---|---|---|---|---|---|---|
| Mean value ± sd of the associated trait | % of mismatchesa | Mean value ± sd of the associated trait | % of mismatchesa | |||
| 3,602,388 | REF (G/G) | PHS-R | 63.84 ± 17.20 | 11.11 | 62.73 ± 3.98 | 0.00 |
| ALT (A/A) | 19.17 ± 11.79 | 5.56 | 11.91 ± 6.22 | 0.00 | ||
| heterozygote (G/A) | 72.94 ± 0.00b | – | –c | – | ||
| ScBx1_1367 | REF (G/G) | PHS-R | 17.15 ± 2.72 | 0.00 | 9.61 ± 5.94 | 0.00 |
| ALT (A/A) | 66.43 ± 14.11 | 5.26 | 62.32 ± 3.74 | 0.00 | ||
| heterozygote (G/A) | 49.32 ± 34.46 | – | 97.00 ± 0.00b | – | ||
| ScBx1_4515 | REF (T/T) | PHS-R | 19.16 ± 11.80 | 5.56 | 11.91 ± 6.22 | 0.00 |
| ALT (C/C) | 63.00 ± 18.73 | 13.33 | 60.05 ± 12.29 | 3.84 | ||
| heterozygote (T/C) | 49.32 ± 34.46 | – | –c | – | ||
| ScBx5_1593 | REF (C/C) | R-R | 3.90 ± 0.36 | 5.00 | 3.81 ± 0.64 | 3.85 |
| ALT (G/G) | 2.49 ± 0.48 | 7.14 | 2.04 ± 0.32 | 7.69 | ||
| heterozygote (C/G) | 3.12 ± 0.80 | – | –c | – | ||
REF homozygote with the same alleles as present in the reference line L318, ALT homozygote with alleles resulting from a given SNP
aEstimated only for homozygotes
bOnly one heterozygote present in EVS
cNo heterozygotes present in EVS