Table 3.
Significant Associations of Short-Term Diesel Exhaust Exposure and CpG Site Methylation Difference (Postexposure − Preexposure) in Adults with Asthma (n = 16)
Chr | GWIS Locus | Probe | Probe Position (Build 37) | CpG Site Location | ΔFA* (Post − Pre) | ΔDE† (Post − Pre) | DE P Value | DE Adjusted P Value‡ |
---|---|---|---|---|---|---|---|---|
5 | ADCY2 | cg04119977 | 7,826,972 | ADCY2 (Body) | −0.015 | −0.019 | 0.0011 | 0.041 |
5 | ADCY2 | cg10995381 | 7,877,198 | MTRR (Body) | −0.013 | −0.032 | 0.0011 | 0.041 |
11 | DLG2 | cg26449294 | 83,169,193 | DLG2 (3′UTR) | −0.010 | −0.021 | 4.64 × 10−5 | 0.017 |
11 | DLG2 | cg09080874 | 83,284,905 | DLG2 (Body) | −0.015 | −0.027 | 3.01 × 10−4 | 0.029 |
11 | DLG2 | cg27373604 | 83,372,714 | DLG2 (5′UTR;Body) | −0.021 | −0.026 | 0.0021 | 0.041 |
11 | DLG2 | cg08432013 | 83,393,570 | DLG2 (Body;TSS200) | −0.010 | −0.025 | 5.85 × 10−4 | 0.031 |
11 | DLG2 | cg02675969 | 83,526,604 | DLG2 (Body) | −0.010 | −0.017 | 0.0018 | 0.041 |
11 | DLG2 | cg05405389 | 84,386,472 | DLG2 (Body) | −0.017 | −0.035 | 0.0016 | 0.041 |
11 | DLG2 | cg18023263 | 84,403,466 | DLG2 (Body) | −0.020 | −0.022 | 0.0013 | 0.041 |
11 | DLG2 | cg14716968 | 84,635,906 | DLG2 (TSS1500;Body) | −0.003 | −0.037 | 4.28 × 10−4 | 0.029 |
11 | DLG2 | cg20275558 | 85,338,473 | TMEM126B; DLG2 (TSS1500;TSS200) | 0.011 | 0.042 | 1.07 × 10−4 | 0.020 |
11 | DLG2 | cg06698742 | 85,359,218 | TMEM126A (5′UTR) | 0.0009 | 0.0041 | 0.0014 | 0.041 |
18 | MOCOS | cg19453250 | 33,710,783 | SLC39A6; ELP2 (TSS1500;Body) | 0.0076 | 0.024 | 0.0019 | 0.041 |
Definition of abbreviations: ADCY2 = adenylate cyclase 2; Chr = chromosome; DE = diesel exhaust exposure; DLG2 = discs, large homolog 2; ELP2 = elongator acetyltransferase complex subunit 2; FA = filtered air; GWIS = genome-wide interaction study; MOCOS = molybdenum cofactor sulfurase; MTRR = 5-methyltetrahydrofolate-homocysteine methyltransferase reductase; SLC39A6 = solute carrier family 39 member A6; TMEM126A = transmembrane protein 126A; TMEM126B = transmembrane protein 126B; UTR = untranslated region.
P values in bold have a value ≤0.05.
ΔFA: relative methylation change postexposure versus preexposure of filtered air.
ΔDE: relative methylation change postexposure versus preexposure of diesel exhaust.
Adjusted P values using the false discovery rate method for multiple testing at a 5% level.