Table 2. Ambiguity-based comparison of consensus sequences generated using various amounts of Crimean-Congo hemorrhagic fever virus (CCHFV) or Japanese encephalitis virus (JPEV) genomes.
| Consensus CCHFV | Consensus JPEV | Consensus CCHFV | Consensus JPEV | Variation CCHFV | Variation JPEV | |
|---|---|---|---|---|---|---|
| Sequences | 10 | 10 | 60 | 153 | N.A.a | N.A. |
| Length (bp) | 5,370 | 10,979 | 5,372 | 10,980 | 2 | 1 |
| GC (%): | 38.18 | 46.33 | 30.49 | 46.45 | -7.68 | -0.11 |
| A (%): | 28.29 | 24.98 | 23.59 | 25.17 | -4.70 | -0.19 |
| C (%): | 18.90 | 20.13 | 14.99 | 20.15 | -3.92 | -0.02 |
| G (%): | 19.27 | 26.20 | 15.51 | 26.30 | -3.77 | -0.10 |
| T (%): | 22.09 | 17.68 | 17.09 | 17.81 | -5.00 | -0.14 |
| Y (%): | 5.51 | 5.16 | 11.58 | 5.11 | 6.07 | 0.05 |
| W (%): | 0.73 | 0.44 | 1.73 | 0.40 | 1.00 | 0.04 |
| V (%): | 0.02 | 0.00 | 0.24 | 0.00 | 0.22 | 0.00 |
| S (%): | 0.04 | 0.30 | 0.50 | 0.26 | 0.47 | 0.05 |
| R (%): | 4.41 | 3.96 | 10.67 | 3.73 | 6.25 | 0.23 |
| N (%): | 0.02 | 0.15 | 0.58 | 0.16 | 0.56 | -0.02 |
| M (%): | 0.34 | 0.57 | 1.62 | 0.53 | 1.28 | 0.05 |
| K (%): | 0.24 | 0.43 | 0.60 | 0.36 | 0.35 | 0.06 |
| H (%): | 0.04 | 0.00 | 0.73 | 0.01 | 0.69 | -0.01 |
| D (%): | 0.06 | 0.00 | 0.35 | 0.00 | 0.30 | 0.00 |
| B (%): | 0.06 | 0.00 | 0.24 | 0.00 | 0.19 | 0.00 |
aN.A., not applicable.