Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1990 Aug;87(16):6029–6033. doi: 10.1073/pnas.87.16.6029

Cloning and expression of rat liver CTP: phosphocholine cytidylyltransferase: an amphipathic protein that controls phosphatidylcholine synthesis.

G B Kalmar 1, R J Kay 1, A Lachance 1, R Aebersold 1, R B Cornell 1
PMCID: PMC54465  PMID: 2166941

Abstract

CTP:phosphocholine cytidylyltransferase (EC 2.7.7.15) is a key regulatory enzyme in the synthesis of phosphatidylcholine in higher eukaryotes. This enzyme can interconvert between an inactive cytosolic form and an active membrane-bound form. To unravel the structure of the transferase and the mechanism of its interaction with membranes, we have cloned a cytidylyltransferase cDNA from rat liver by the oligonucleotide-directed polymerase chain reaction. Transfection of the rat clone into COS cells resulted in a 10-fold increase in cytidylyltransferase activity and content. The activity of the transfected transferase was lipid-dependent. The central portion of the derived protein sequence of the rat clone is highly homologous to the previously determined yeast cytidylyltransferase sequence [Tsukagoshi, Y., Nikawa, J. & Yamashita, S. (1987) Eur. J. Biochem. 169, 477-486]. The rat protein sequence lacks any signals for covalent lipid attachment and lacks a hydrophobic domain long enough to span a bilayer. However, it does contain a potential 58-residue amphipathic alpha-helix, encompassing three homologous 11-residue repeats. We propose that the interaction of cytidylyltransferase with membranes is mediated by this amphipathic helix lying on the surface with its axis parallel to the plane of the membrane such that its hydrophobic residues intercalate the phospholipids.

Full text

PDF
6029

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aebersold R. H., Leavitt J., Saavedra R. A., Hood L. E., Kent S. B. Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. Proc Natl Acad Sci U S A. 1987 Oct;84(20):6970–6974. doi: 10.1073/pnas.84.20.6970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Besterman J. M., Pollenz R. S., Booker E. L., Jr, Cuatrecasas P. Diacylglycerol-induced translocation of diacylglycerol kinase: use of affinity-purified enzyme in a reconstitution system. Proc Natl Acad Sci U S A. 1986 Dec;83(24):9378–9382. doi: 10.1073/pnas.83.24.9378. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Burn P. Amphitropic proteins: a new class of membrane proteins. Trends Biochem Sci. 1988 Mar;13(3):79–83. doi: 10.1016/0968-0004(88)90043-6. [DOI] [PubMed] [Google Scholar]
  4. Caras I. W., Weddell G. N., Davitz M. A., Nussenzweig V., Martin D. W., Jr Signal for attachment of a phospholipid membrane anchor in decay accelerating factor. Science. 1987 Nov 27;238(4831):1280–1283. doi: 10.1126/science.2446389. [DOI] [PubMed] [Google Scholar]
  5. Cheng H. C., van Patten S. M., Smith A. J., Walsh D. A. An active twenty-amino-acid-residue peptide derived from the inhibitor protein of the cyclic AMP-dependent protein kinase. Biochem J. 1985 Nov 1;231(3):655–661. doi: 10.1042/bj2310655. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979 Nov 27;18(24):5294–5299. doi: 10.1021/bi00591a005. [DOI] [PubMed] [Google Scholar]
  7. Chou P. Y., Fasman G. D. Empirical predictions of protein conformation. Annu Rev Biochem. 1978;47:251–276. doi: 10.1146/annurev.bi.47.070178.001343. [DOI] [PubMed] [Google Scholar]
  8. Cisek L. J., Corden J. L. Phosphorylation of RNA polymerase by the murine homologue of the cell-cycle control protein cdc2. Nature. 1989 Jun 29;339(6227):679–684. doi: 10.1038/339679a0. [DOI] [PubMed] [Google Scholar]
  9. Cornell R. Chemical cross-linking reveals a dimeric structure for CTP:phosphocholine cytidylyltransferase. J Biol Chem. 1989 May 25;264(15):9077–9082. [PubMed] [Google Scholar]
  10. Cornell R., Vance D. E. Binding of CTP: phosphocholine cytidylyltransferase to large unilamellar vesicles. Biochim Biophys Acta. 1987 May 13;919(1):37–48. doi: 10.1016/0005-2760(87)90215-3. [DOI] [PubMed] [Google Scholar]
  11. Cornell R., Vance D. E. Translocation of CTP: phosphocholine cytidylyltransferase from cytosol to membranes in HeLa cells: stimulation by fatty acid, fatty alcohol, mono- and diacylglycerol. Biochim Biophys Acta. 1987 May 13;919(1):26–36. doi: 10.1016/0005-2760(87)90214-1. [DOI] [PubMed] [Google Scholar]
  12. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Eisenberg D., Weiss R. M., Terwilliger T. C. The helical hydrophobic moment: a measure of the amphiphilicity of a helix. Nature. 1982 Sep 23;299(5881):371–374. doi: 10.1038/299371a0. [DOI] [PubMed] [Google Scholar]
  14. Epand R. M., Surewicz W. K. Effect of phase transitions on the interaction of peptides and proteins with phospholipids. Can J Biochem Cell Biol. 1984 Nov;62(11):1167–1173. doi: 10.1139/o84-150. [DOI] [PubMed] [Google Scholar]
  15. Farrar W. L., Thomas T. P., Anderson W. B. Altered cytosol/membrane enzyme redistribution on interleukin-3 activation of protein kinase C. Nature. 1985 May 16;315(6016):235–237. doi: 10.1038/315235a0. [DOI] [PubMed] [Google Scholar]
  16. Feldman D. A., Rounsifer M. E., Weinhold P. A. The stimulation and binding of CTP: phosphorylcholine cytidylyltransferase by phosphatidylcholine-oleic acid vesicles. Biochim Biophys Acta. 1985 Mar 6;833(3):429–437. doi: 10.1016/0005-2760(85)90100-6. [DOI] [PubMed] [Google Scholar]
  17. Feldman D. A., Weinhold P. A. CTP:phosphorylcholine cytidylyltransferase from rat liver. Isolation and characterization of the catalytic subunit. J Biol Chem. 1987 Jul 5;262(19):9075–9081. [PubMed] [Google Scholar]
  18. Garnier J., Osguthorpe D. J., Robson B. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J Mol Biol. 1978 Mar 25;120(1):97–120. doi: 10.1016/0022-2836(78)90297-8. [DOI] [PubMed] [Google Scholar]
  19. Gubler U., Hoffman B. J. A simple and very efficient method for generating cDNA libraries. Gene. 1983 Nov;25(2-3):263–269. doi: 10.1016/0378-1119(83)90230-5. [DOI] [PubMed] [Google Scholar]
  20. Hamilton S. E., Recny M., Hager L. P. Identification of the high-affinity lipid binding site in Escherichia coli pyruvate oxidase. Biochemistry. 1986 Dec 16;25(25):8178–8183. doi: 10.1021/bi00373a009. [DOI] [PubMed] [Google Scholar]
  21. Hammarskjöld M. L., Wang S. C., Klein G. High-level expression of the Epstein-Barr virus EBNA1 protein in CV1 cells and human lymphoid cells using a SV40 late replacement vector. Gene. 1986;43(1-2):41–50. doi: 10.1016/0378-1119(86)90006-5. [DOI] [PubMed] [Google Scholar]
  22. Hancock J. F., Magee A. I., Childs J. E., Marshall C. J. All ras proteins are polyisoprenylated but only some are palmitoylated. Cell. 1989 Jun 30;57(7):1167–1177. doi: 10.1016/0092-8674(89)90054-8. [DOI] [PubMed] [Google Scholar]
  23. Hawkes R., Niday E., Gordon J. A dot-immunobinding assay for monoclonal and other antibodies. Anal Biochem. 1982 Jan 1;119(1):142–147. doi: 10.1016/0003-2697(82)90677-7. [DOI] [PubMed] [Google Scholar]
  24. Kaiser E. T., Kézdy F. J. Peptides with affinity for membranes. Annu Rev Biophys Biophys Chem. 1987;16:561–581. doi: 10.1146/annurev.bb.16.060187.003021. [DOI] [PubMed] [Google Scholar]
  25. Kamps M. P., Buss J. E., Sefton B. M. Mutation of NH2-terminal glycine of p60src prevents both myristoylation and morphological transformation. Proc Natl Acad Sci U S A. 1985 Jul;82(14):4625–4628. doi: 10.1073/pnas.82.14.4625. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell. 1986 Jan 31;44(2):283–292. doi: 10.1016/0092-8674(86)90762-2. [DOI] [PubMed] [Google Scholar]
  27. Kyte J., Doolittle R. F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982 May 5;157(1):105–132. doi: 10.1016/0022-2836(82)90515-0. [DOI] [PubMed] [Google Scholar]
  28. Marqusee S., Baldwin R. L. Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design. Proc Natl Acad Sci U S A. 1987 Dec;84(24):8898–8902. doi: 10.1073/pnas.84.24.8898. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Munday M. R., Campbell D. G., Carling D., Hardie D. G. Identification by amino acid sequencing of three major regulatory phosphorylation sites on rat acetyl-CoA carboxylase. Eur J Biochem. 1988 Aug 1;175(2):331–338. doi: 10.1111/j.1432-1033.1988.tb14201.x. [DOI] [PubMed] [Google Scholar]
  30. Murakami N., Healy-Louie G., Elzinga M. Amino acid sequence around the serine phosphorylated by casein kinase II in brain myosin heavy chain. J Biol Chem. 1990 Jan 15;265(2):1041–1047. [PubMed] [Google Scholar]
  31. Nishizuka Y. The molecular heterogeneity of protein kinase C and its implications for cellular regulation. Nature. 1988 Aug 25;334(6184):661–665. doi: 10.1038/334661a0. [DOI] [PubMed] [Google Scholar]
  32. Ono Y., Fujii T., Igarashi K., Kuno T., Tanaka C., Kikkawa U., Nishizuka Y. Phorbol ester binding to protein kinase C requires a cysteine-rich zinc-finger-like sequence. Proc Natl Acad Sci U S A. 1989 Jul;86(13):4868–4871. doi: 10.1073/pnas.86.13.4868. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Pearson W. R., Lipman D. J. Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444–2448. doi: 10.1073/pnas.85.8.2444. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Rando R. R. Regulation of protein kinase C activity by lipids. FASEB J. 1988 May;2(8):2348–2355. doi: 10.1096/fasebj.2.8.3282960. [DOI] [PubMed] [Google Scholar]
  35. Recny M. A., Grabau C., Cronan J. E., Jr, Hager L. P. Characterization of the alpha-peptide released upon protease activation of pyruvate oxidase. J Biol Chem. 1985 Nov 15;260(26):14287–14291. [PubMed] [Google Scholar]
  36. Rouzer C. A., Kargman S. Translocation of 5-lipoxygenase to the membrane in human leukocytes challenged with ionophore A23187. J Biol Chem. 1988 Aug 5;263(22):10980–10988. [PubMed] [Google Scholar]
  37. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  38. Sanghera J. S., Vance D. E. CTP:phosphocholine cytidylyltransferase is a substrate for cAMP-dependent protein kinase in vitro. J Biol Chem. 1989 Jan 15;264(2):1215–1223. [PubMed] [Google Scholar]
  39. Schiffer M., Edmundson A. B. Use of helical wheels to represent the structures of proteins and to identify segments with helical potential. Biophys J. 1967 Mar;7(2):121–135. doi: 10.1016/S0006-3495(67)86579-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Tsukagoshi Y., Nikawa J., Yamashita S. Molecular cloning and characterization of the gene encoding cholinephosphate cytidylyltransferase in Saccharomyces cerevisiae. Eur J Biochem. 1987 Dec 15;169(3):477–486. doi: 10.1111/j.1432-1033.1987.tb13635.x. [DOI] [PubMed] [Google Scholar]
  41. Watkins J. D., Kent C. Phosphorylation of CTP:phosphocholine cytidylyltransferase in vivo. Lack of effect of phorbol ester treatment in HeLa cells. J Biol Chem. 1990 Feb 5;265(4):2190–2197. [PubMed] [Google Scholar]
  42. Weinhold P. A., Rounsifer M. E., Charles L., Feldman D. A. Characterization of cytosolic forms of CTP: choline-phosphate cytidylyltransferase in lung, isolated alveolar type II cells, A549 cell and Hep G2 cells. Biochim Biophys Acta. 1989 Dec 18;1006(3):299–310. doi: 10.1016/0005-2760(89)90017-9. [DOI] [PubMed] [Google Scholar]
  43. Weinhold P. A., Rounsifer M. E., Feldman D. A. The purification and characterization of CTP:phosphorylcholine cytidylyltransferase from rat liver. J Biol Chem. 1986 Apr 15;261(11):5104–5110. [PubMed] [Google Scholar]
  44. Weinhold P. A., Rounsifer M. E., Williams S. E., Brubaker P. G., Feldman D. A. CTP:phosphorylcholine cytidylyltransferase in rat lung. The effect of free fatty acids on the translocation of activity between microsomes and cytosol. J Biol Chem. 1984 Aug 25;259(16):10315–10321. [PubMed] [Google Scholar]
  45. Woodgett J. R., Gould K. L., Hunter T. Substrate specificity of protein kinase C. Use of synthetic peptides corresponding to physiological sites as probes for substrate recognition requirements. Eur J Biochem. 1986 Nov 17;161(1):177–184. doi: 10.1111/j.1432-1033.1986.tb10139.x. [DOI] [PubMed] [Google Scholar]
  46. Wright P. S., Morand J. N., Kent C. Regulation of phosphatidylcholine biosynthesis in Chinese hamster ovary cells by reversible membrane association of CTP: phosphocholine cytidylyltransferase. J Biol Chem. 1985 Jul 5;260(13):7919–7926. [PubMed] [Google Scholar]
  47. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES