TABLE 1.
Parameter | Value fora: |
|
---|---|---|
Apo | 3'-SLN | |
Data collection statistics | ||
Beamline | APS-23 | APS-23 |
Wavelength (Å) | 1.0332 | 1.0332 |
Space group | P3 | P3 |
Unit cell (Å) | a = b = 115.9; c = 128.4 | a = b = 116.6; c = 129.1 |
Resolution (Å) | 50.00–3.10 (3.15–3.10) | 50.00–2.75 (2.80–2.75) |
No. of observations | 143,348 | 132,482 |
No. of unique reflections | 34,747 (1,596) | 49,813 (2,489) |
Completeness (%) | 98.7 (90.7) | 97.4 (99.3) |
I/σ(I) | 9.1 (1.7) | 10.8 (1.7) |
CC1/2b | 0.94 (0.89) | 0.87 (0.52) |
Rsymc | 0.18 (0.44) | 0.14 (0.99) |
Rpimd | 0.08 (0.23) | 0.08 (0.58) |
Redundancy | 4.1 (3.1) | 2.7 (2.6) |
Refinement statistics | ||
Resolution (Å) | 50.00–3.10 (3.15–3.10) | 50.00–2.75 (2.80–2.75) |
No. of reflections | 34,651 | 49,791 |
Rcryste/Rfreef | 0.221/0.263 | 0.222/0.275 |
No. of atoms | ||
Protein | 7,788 | 7,736 |
Carbohydrate | 84 | 162 |
Water | 105 | |
Wilson B (Å2) | 46 | 43 |
Avg B value (Å2) | ||
Overall | 48 | 46 |
Water | 44 | |
Ligand | 72 | |
RMSDg from ideal geometry | ||
Bond length (Å) | 0.014 | 0.014 |
Bond angle (°) | 2.2 | 1.9 |
Ramachandran plot (%)h | ||
Favored | 96.8 | 95.5 |
Outliers | 0.2 | 0.2 |
PDB ID | 5TG8 | 5TG9 |
Values in parentheses are the outer shell statistics.
CC1/2 is the Pearson correlation coefficient between two random half data sets.
Rsym = Σhkl Σi | Ihkl,i − 〈Ihkl〉 |/Σhkl Σi Ihkl,i, where Ihkl,i is the scaled intensity of the ith measurement of reflection h, k, l, and 〈Ihkl〉 is the average intensity for that reflection.
Rpim = Σhkl [1/(n − 1)]1/2 Σi | Ihkl,i − 〈Ihkl〉 |/Σhkl Σi Ihkl,i, where n is the redundancy.
Rcryst = Σhkl | Fo − Fc |/Σhkl | Fo | × 100, where Fo and Fc are the observed and calculated structure factors, respectively.
Rfree was calculated as for Rcryst, but on a test set of 5% of the data excluded from refinement.
RMSD, root mean square deviation.
Calculated using MolProbity (62).