Table 3.
Locations of predicted ORFs in the genome of AcCoV-JC34
| ORF | Location (nt) | Length (nt/aa) | TRS location | TRS sequence(s) (distance to AUG) |
|---|---|---|---|---|
| 1ab | 437–20376 (shift at 12361) | 19940/6645 | 181 | CAACTCAACUAAACG(247)ATG |
| S | 20376–23756 | 3381/1126 | 20306 | TGGTAAACUUATTGTTAG(64)ATG |
| 3 | 23753–24397 | 645/214 | 23711 | TGTTGUACUAAACCT(36)ATG |
| E | 24397–24633 | 237/78 | 24392 | CCACTTAACUA A TG |
| M | 24643–25389 | 747/248 | 24636 | TTGATCAACUAAAATG |
| 6 | 25401–25901 | 501/166 | 25389 | GGTCTAAACUAAACCATTATG |
| N | 25903–27072 | 1170/389 | 25896 | AATTTCAACUAAAATG |
| 8 | 26530–27702 | 543/180 | 26484 | TAGATCGCACUAA(40)ATG |
| 9 | 27074/27391 | 318/105 | 27060 | TGATGAAACUAACGCCTAAAATG |
Start codons are underlined. The conserved (AACUAA) or variant (AACUUA, UACUAA, CACUAA) TRS core sequences are highlighted in bold