Table 4.
Potential targets and TE elements of top 40 differentially expressed siRNAs during the floral transition of Malus domestica.
| Repeat | Chromosome | Start | End | TE element | Target protein ID | Target |
|---|---|---|---|---|---|---|
| INTRAGENIC REGION (INTRON) | ||||||
| repeat_1085094 | Unanchored | 51760264 | 51760412 | LTR trim terminal | MDP0000664744 | Heat shock protein HSP20 |
| repeat_1117604 | Chr2 | 10581879 | 10582001 | Unclassified | MDP0000314081 | Rhodanese-like protein |
| repeat_1028150 | Chr3 | 32067196 | 32067416 | LTR copia termial | MDP0000247441 | Pectinesterase; DNA binding |
| repeat_1265460 | Chr8 | 4276443 | 4276475 | Unclassified tandem | MDP0000490697 | Phosphatase |
| repeat_1265461 | Chr8 | 4291702 | 4291734 | Unclassified tandem | MDP0000488182 | Unknown |
| repeat_853832 | Chr9 | 30625201 | 30625309 | TIR spring inverted | MDP0000438624 | Unknown |
| MDP0000266324 | WD40-like protein | |||||
| repeat_853530 | Chr14 | 27263462 | 27263596 | TIR spring inverted | MDP0000241035 | Zinc ion binding |
| MDP0000312371 | ATP binding; nucleic binding | |||||
| INTRAGENIC REGION (EXTRON) | ||||||
| repeat_1270144 | Chr2 | 4978879 | 4979011 | Unclassified tandem | MDP0000197534 | DNA binding |
| repeat_1039882 | Chr4 | 22346821 | 22346934 | Unclassified | MDP0000692845 | Peptidase |
| repeat_1289450 | Chr7 | 14280602 | 14280669 | Ribosomal unclassified | MDP0000268430 | Nucleus protein |
| repeat_1265459 | Chr8 | 4285173 | 4285205 | Unclassified tandem | MDP0000265846 | Zinc ion binding |
| repeat_1267023 | Chr9 | 30630665 | 30630773 | Unclassified tandem | MDP0000321586 | Isoprenoid synthase |
| repeat_1039981 | Chr11 | 908937 | 909060 | Unclassified | MDP0000849784 | Unknown |
| repeat_1117835 | Chr15 | 20360355 | 20360459 | Unclassified | MDP0000304869 | Unknown |
| repeat_1267817 | Chr17 | 311713 | 311849 | Unclassified tandem | MDP0000083486 | ATase |
| repeat_853499 | Chr17 | 5016279 | 5016409 | TIR spring inverted | MDP0000286141 | Glucosyltransferase |
| INTERGENIC REGION | ||||||
| repeat_1269060 | Unanchored | 6189646 | 6189801 | Unclassified tandem | MDP0000135966 | Unknown |
| MDP0000734661 | Leucine-rich repeat | |||||
| repeat_1270145 | Chr2 | 4978251 | 4978383 | Unclassified tandem | MDP0000197534 | DNA binding |
| repeat_1039411 | Chr4 | 1228773 | 1228888 | Unclassified | MDP0000124365 | Unknown |
| repeat_1269362 | Chr4 | 1278056 | 1278216 | Unclassified tandem | MDP0000872787 | Unknown |
| repeat_1265373 | Chr5 | 10388169 | 10388199 | Unclassified tandem | MDP0000319295 | protein binding |
| repeat_1267275 | Chr7 | 1274745 | 1274848 | Unclassified tandem | MDP0000183959 | Galactose-like |
| repeat_1260363 | Chr8 | 365188 | 365314 | Unclassified | MDP0000376261 | Unknown |
| repeat_1040200 | Chr9 | 12254661 | 12254789 | Unclassified | MDP0000311464 | Oxidoreducta |
| repeat_873607 | Chr10 | 24553191 | 24553235 | LTR trim terminal | MDP0000289531 | Calcium ion binding |
| repeat_1119810 | Chr12 | 1189324 | 1189408 | Unclassified | MDP0000257983 | Unknown |
| repeat_1062664 | Chr14 | 16793739 | 16794145 | LTR gypsy terminal | MDP0000286350 | Endopeptidase |
| repeat_1040003 | Chr15 | 11077070 | 11077182 | Unclassified | MDP0000197911 | Protein kinase |
| repeat_1039784 | Unanchored | 9053589 | 9053706 | Unclassified | MDP0000228072 | Unknown |
| repeat_1265811 | Unanchored | 92494467 | 92494514 | Unclassified tandem | MDP00001634 | Actin-binding FH2 |
| repeat_1265458 | Unanchored | 102659034 | 102659066 | Unclassified tandem | MDP0000156554 | Iron ion binding |
| repeat_1266082 | Chr3 | 8503155 | 8503210 | Unclassified tandem | MDP0000165108 | Ribosome |
| MDP0000152862 | Unknown | |||||
| repeat_853972 | Chr3 | 8672342 | 8672447 | TIR spring inverted | MDP0000252384 | Unknown |
| repeat_854466 | Chr8 | 4291702 | 4291734 | Unclassified tandem | MDP0000209821 | Iron ion binding |
| repeat_1270178 | Chr10 | 12548160 | 12548315 | Unclassified tandem | MDP0000649828 | Calcium ion binding |
| repeat_855585 | Chr12 | 29732429 | 29732584 | TIR spring inverted | MDP0000214500 | Diacylglycerol acyltransferase |
| repeat_1265663 | Chr15 | 25979552 | 25979599 | Unclassified tandem | MDP0000228862 | Actin-binding FH2 |
| repeat_1039352 | Chr15 | 28620140 | 28620275 | Unclassified tandem | MDP0000088811 | Protein binding |
| repeat_856374 | Chr16 | 7712559 | 7712712 | TIR spring inverted | MDP0000307719 | Glutamate_decaFBoxylase |
| repeat_854465 | Chr17 | 311713 | 311849 | Unclassified tandem | MDP0000203334 | Protein binding |