Table 1.
Different energy parameters for the modeled SlWRKY3 protein measuring their structural stability on the basis of Discrete optimized protein energy (DOPE Score), PDF physical energy, and PDF total energy.
| Model name | PDF total energy | PDF physical energy | DOPE score |
|---|---|---|---|
| PREDICTED MODEL SCORES SlWRKY3 | |||
| MODEL1(M0001) | 267.4683 | 159.07849 | –4106.107422 |
| MODEL3(M0003) | 274.2886 | 161.134994 | –4093.040039 |
| MODEL4(M0004) | 284.0109 | 164.137915 | –4076.419189 |
| MODEL5(M0005) | 310.2852 | 165.89298 | –4058.052002 |
| MODEL2(M0002) | 329.7176 | 171.88393 | –4100.641602 |
The DOPE model score is designed for selecting the best structure from a collection of models built by MODELLER and the best model can be judged by either low dope score or low mol PDF.