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. 2017 Jan 20;33(11):1630–1638. doi: 10.1093/bioinformatics/btx025

Fig. 1.

Fig. 1.

Visual representation of the mPTP dynamic programming algorithm. Each entry i at node u is computed from information stored at entries j and k of child nodes v and w, for all j and k such that i=j+k+2. The dashed branches denote the smallest set S of branches which, by definition, must be part of the speciation process, irrespective of the resolution of other subtrees outside Tu