Table 1.
Comparative 16S rDNA and PQQ gene abundance in different sampling sites as revealed by qPCR analysis. Each value is the mean of three replicates. Values in parentheses indicate standard error
S. no. | Sampling site | Latitude, longitude | Elevation (m) | Climate | Copy No. (per g of soil) | |
---|---|---|---|---|---|---|
16SrDNA gene | PQQ gene | |||||
1 | Surkhanda | 30°24′41″N, 78°17′17″E | 2757 | Temperate | 1.19 × 1010 (±1.11 × 102) | 1.12 × 102 (±1.08 × 102) |
2 | Munsyari | 30.07°N, 80.23°E | 2200 | Temperate | 1.59 × 1012 (±1.36 × 103) | 1.38 × 103 (±2.98 × 102) |
3 | Chakrata | 30°41′46″N, 77°52′10″E | 2118 | Temperate | 1.50 × 1010 (±1.37 × 103) | 3.11 × 102 (±1.21 × 102) |
4 | Nainital | 29.23°N, 79.30°E | 2084 | Temperate | 2.69 × 1011 (±2.31 × 103) | 1.62 × 103 (±1.90 × 102) |
5 | Mussoorie | 30°27′15″N, 78°5′0″E | 2005.5 | Temperate | 1.47 × 109 (±2.21 × 102) | 2.35 × 102 (±1.01 × 102) |
6 | Pauri | 30°8′54″N, 78°46′26″E | 1814 | Sub-temperate | 3.57 × 108 (±3.01 × 102) | 5.38 × 102 (±2.92 × 102) |
7 | Lansdowne | 29°50′35″N, 78°40′44″E | 1700 | Sub-temperate | 1.10 × 1010 (±1.14 × 102) | 4.38 × 102 (±1.09 × 102) |
8 | Mahabgarh | 29°52′40″N, 78°27′18″E | 1650 | Sub-temperate | 2.96 × 1010 (±1.91 × 102) | 1.09 × 103 (±1.11 × 102) |
9 | Chamba | 30°21′59″N, 78°23′49″E | 1524 | Sub-temperate | 1.27 × 109 (±2.01 × 103) | 2.89 × 102 (±1.78 × 102) |
10 | Kandakhal | 29.52°N, 78.34°E | 1427 | Subtropical | 4.63 × 1010 (±1.12 × 102) | 3.11 × 103 (±1.4 × 102) |
11 | Dugadda | 29°48′28″N, 78°36′30″E | 932 | Subtropical | 7.40 × 109 (±1.48 × 102) | 5.99 × 102 (±1.63 × 102) |
12 | Aamsour | 29°47′10″N, 78°35′13″E | 745 | Subtropical | 2.80 × 1010 (±3.01 × 102) | 1.90 × 102 (±1.33 × 102) |
13 | Satpuli | 29°55′10″N, 78°42′33″E | 657 | Subtropical | 7.17 × 109 (±1.91 × 102) | 3.38 × 102 (±2.61 × 102) |
14 | Srinagar | 30°13′31″N, 78°47′42″E | 560 | Subtropical | 1.03 × 1010 (±1.44 × 103) | 4.36 × 102 (±1.95 × 102) |
15 | Kotdwar | 29°45′24″N, 78°29′17″E | 454 | Subtropical | 1.80 × 1010 (±2.66 × 103) | 1.01 × 103 (±1.93 × 102) |