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. 2017 May 10;114(21):5455–5460. doi: 10.1073/pnas.1611506114

Table S1.

Principal model parameters

Symbol Meaning Value
λD Debye length 0.8 nm*
A Hamaker constant 8×1021 J
λsr Decay length for intermembrane steric-hydration force 0.2 nm
P0 Pressure prefactor for intermembrane steric-hydration force 6×1011 dyn/cm2
lp Persistence length of uncomplexed SNARE domains 0.6 nm§
Contour length of uncomplexed SNARE domains, per residue 0.365 nm§
Length of SNARE bundle 10 nm
Thickness of SNARE bundle 2 nm
T Temperature 298 K#
*

Calculated using a physiological salt concentration of 0.15 M.

Typical value for lipid bilayers, from ref. 29.

Calculated as the composition weighted mean of the values reported for pure substances from ref. 28. Membranes considered in this study contained 82% PC, 3% PE, and 15% PS, mimicking a typical composition used for in vitro assays (11). We assumed that PS and PE have similar hydration properties.

§

Typical values for unstructured polypeptides, from ref. 7.

Estimated using PyMOL software using PDB ID code 3HD7.

#

The value used for all simulations except for temperature sweep simulations.