Table 6. Gene identities of the top differentially regulated genes under each stress with FC ≥ 4 and FC ≤-4.
| Contig (c) | FC | Stress | Putative protein | Function/Molecular process |
|---|---|---|---|---|
| c_6101 | 7.9 | D | branched-chain-amino-acid aminotransferase 2 | Amino-acid biosynthesis |
| c_14246 | 7.4 | C | C-regulated protein | Response to stress |
| c_1631 | 7.3 | S | lipid transfer protein 4-like | Signaling. cell wall loosening |
| c_2210 | 7.1 | S | protease inhibitor/seed storage/lipid transfer protein | Proteolysis |
| c_2833 | 7 | DH | bifunctional lysine-ketoglutarate (LKR/SDH) | L-lysine catabolic process |
| c_15577 | 6.8 | DH | transmembrane amino acid transporter-like protein | Amino-acid transport |
| c_11470 | 6.5 | C | sulfotransferase family protein | Response to jasmonate |
| c_9848 | 6.5 | C | low-temperature regulated protein BN115 | Response to stress |
| c_10453 | 6.4 | W | glutamate dehydrogenase | Amino-acid metabolism |
| c_4022 | 6.4 | C | methylcrotonoyl-CoA carboxylase beta chain | Leucine catabolic process |
| c_21786 | 6.4 | W | inositol oxygenase 4 | Ascorbate biosynthesis |
| c_3112 | 6.3 | DH | calcium-binding protein CML19 | Ca2+ signaling |
| c_394 | 6.3 | S | water-soluble chlorophyll protein | Endopeptidase inhibition |
| c_8403 | 6.2 | C | ANAC019 | Gene regulation |
| c_15152 | 5.8 | D | UDP-D-glucose/UDP-D-galactose 4-epimerase 1 | Sugar metabolic process |
| c_3711 | 5.7 | W | arginine vasopressin (AVP1-2) | Proton transport |
| c_22888 | 5.7 | W | wound-responsive 3 | Transport |
| c_18235 | 5.7 | D | methylcrotonoyl-CoA carboxylase subunit alpha | Leucine catabolic process |
| c_31444 | 4.1 | N-st | hypothetical protein | - |
| c_4295 | -4.6 | H | Cu/Zn-superoxide dismutase copper chaperone precursor | Oxidation-reduction |
| c_19381 | -4.8 | S | germin-like protein | Disease resistance |
| c_6302 | -5 | C | peptide methionine sulfoxide reductase B9 | Oxidation-reduction |
| c_23069 | -5.1 | S | invertase/pectin methylesterase inhibitor | Neg. regulation of enzyme |
| c_907 | -5.3 | C | subtilisin-like protease | Proteolysis |
| c_2067 | -5.5 | D | phosphoglycerate kinase 1 | Glycolysis |
| c_150 | -5.6 | D | glyceraldehyde 3-phosphate dehydrogenase A subunit 2 | Glucose metabolic process |
| c_4002 | -5.8 | W | nucleosome assembly protein 1;2 | DNA repair |
| c_2432 | -5.8 | W | thylakoid lumenal 29.8 kDa protein | Glucosinolate metabolic process |
| c_544 | -6.1 | DH | glucose-1-phosphate adenylyltransferase large subunit 1 | Starch biosynthesis |
| c_2445 | -6.1 | DH | cytochrome P450. family 706 subfamily A. polypeptide 6 | Oxidation-reduction |
| c_7318 | -6.1 | W | putative FKBP-type peptidyl-prolyl cis-trans isomerase 4 | Protein folding |
| c_3063 | -6.4 | DH | Peptidyl-prolyl cis-trans isomerase CYP20-3 | Protein folding |
| c_12218 | -6.5 | DH | CHAPERONIN 60 BETA (CPN60B) | Protein folding |
| c_1608 | -6.8 | DH | 2-cys peroxiredoxin. chloroplast | Defense response |
| c_4852 | -7 | W | thioredoxin F-type 1 | Cell redox homeostasis |
| c_1814 | -7.2 | W | phosphoethanolamine N-methyltransferase | Lipid biosynthesis |
| c_280 | -7.9 | D | epithiospecifier modifier | Glucosinolate biosynthesis |
| c_469 | -8.5 | D | oxalic acid oxidase | Nutrient reservoir activity |
Abbreviations: C, cold; D, dark; DH, dehydration; W, wounding; S, salinity; H, heat; N-st, nitrogen starvation