Table 1. Circadian lncRNAs oscillating in at least six mouse tissues.
| Chr | Start | End | ID | Cluster | Liver | Kidney | Heart | Brain stem | Adrenal gland | Muscle | Brown fat | White fat | Lung | Aorta | Cerebellum | Hypothalamus | SCN | Neighboring genes | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr7 | 117263651 | 117265632 | lnc_07344 | cluster_7325 | 12.3 | 11.8 | 14.2 | 12.5 | 12.7 | 16.2 | 15.5 | 12.8 | 11.3 | 14.0 | 14.5 | NA | NA | Wee1 | bi; B |
| chr4 | 144553297 | 144555395 | lnc_10282 | cluster_5569 | 20.3 | 19.7 | NA | 15.8 | 19.3 | NA | 21.2 | 21.5 | 19.5 | 20.3 | 20.8 | NA | NA | Vps13d | in |
| chr7 | 120383763 | 120386730 | lnc_12450 | cluster_7071 | 22.3 | 22.0 | 23.5 | NA | 20.7 | 21.7 | 22.8 | 22.7 | 22.0 | 23.8 | NA | NA | NA | Bmal1 | sen; B,R,E |
| chr16 | 42884482 | 42912183 | lnc_02172 | cluster_3171 | 16.2 | 15.3 | 18.8 | NA | NA | NA | 19.0 | NA | 17.2 | 17.5 | 18.5 | 17.8 | NA | Zbtb20 | an; E |
| chr7 | 71042148 | 71044758 | lnc_10849 | cluster_6986 | 14.3 | 11.7 | 14.7 | NA | 11.0 | NA | 15.8 | NA | 10.7 | 14.2 | NA | 14.3 | 12.3 | Klf13 | an; B,R,E |
| chr9 | 21875445 | 21890575 | lnc_02176 | cluster_7921 | 5.3 | 5.3 | 2.5 | NA | 7.0 | NA | NA | 9.7 | 7.3 | 8.2 | NA | NA | NA | Zfp653,Ecsit | bi, an; B |
| chr4 | 144556433 | 144557622 | lnc_06077 | cluster_5570 | 20.3 | 19.8 | NA | NA | 19.2 | 20.5 | 18.8 | NA | 20.0 | 19.8 | NA | NA | NA | Vps13d | in; |
| chr17 | 15533165 | 15570545 | lnc_01930 | cluster_3254 | 12.0 | 14.0 | 15.3 | NA | NA | NA | NA | NA | 14.7 | 16.0 | 17.7 | NA | NA | Dll1 | in; B,R,E |
| chr4 | 126698544 | 126714258 | lnc_02286 | cluster_5522 | 12.8 | NA | 15.8 | 15.8 | 15.2 | NA | NA | NA | NA | NA | 18.7 | 18.0 | 16.8 | Sfpq | sen; E |
| chr13 | 35069616 | 35086013 | lnc_02666 | cluster_2087 | 9.2 | NA | 6.3 | 11.3 | 7.3 | NA | NA | NA | 5.5 | NA | NA | 10.8 | NA | Eci2 | sen; B,R,E |
| chr4 | 144550296 | 144553133 | lnc_06076 | cluster_5568 | 20.0 | 19.7 | NA | NA | 20.5 | NA | 22.7 | NA | 19.3 | 20.8 | NA | NA | NA | Vps13d | in; B,R,E |
| chr8 | 83404345 | 83405404 | lnc_07494 | cluster_7521 | 13.2 | 12.8 | 17.3 | NA | 14.7 | NA | 20.3 | NA | 12.5 | NA | NA | NA | NA | Gab1 | bi |
| chr5 | 5782334 | 5782661 | lnc_12024 | cluster_6159 | 14.5 | 15.3 | NA | NA | 18.2 | 21.0 | 18.5 | 19.8 | NA | NA | NA | NA | NA | Steap1 | in |
bi(bidirectional; in(intergenic; an(antisense); sen(sense overlapping); B(BMAL 1 binding); R(REV ERBα binding); E(Enhancer); NA(non-circadian).