Figure 5.

Secondary structure downstream of CS. Prediction of secondary structures of sae-fragments cloned in pCG212, pCG213, pCG394, pCG392 and pCG408 by the mfold software (38). In each panel, the schematic representation of the construct is shown together with the predicted secondary structure (CS: cleavage site; aCS1: alternative cleavage site1; aCS2: alternative cleavage site 2; Rrs: RNase Y recognition sequence; Rrs*: Rrs counterpart). Deletions are indicated by a cross. In the predicted secondary structure, when present, Rrs is encircled with a bold line. For clarity, only the portion of the transcript that is of interest is shown.