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. 2017 Feb 10;45(10):e88. doi: 10.1093/nar/gkx093

Table 2. The coverages and stutter ratios of the MiSeq-detected SSRs in rice varieties A–H.

Varieties SSRs A B C D E F G H Average Standard deviation
Total reads (M) 2.12 2.31 2.74 2.42 2.53 2.23 3.11 2.33 2.35 0.47
Consistent reads (M) 1 1.56 1.73 1.98 1.78 1.87 1.55 2.34 1.69 1.81 0.26
Reads mapped to SSR amplicons (M) 1.17 1.40 1.61 1.35 1.30 1.06 1.73 1.40 1.38 0.22
Detected SSRs 2480 2290 2476 2334 2297 2480 2597 2468 2427.75 108.83
Detected SSRs (%)2 79.87 73.75 79.74 75.17 73.98 79.87 83.64 79.48 78.19 3.51
Coverage per detected SSR 508.90 646.83 669.96 629.30 597.77 426.90 687.18 590.68 594.69 87.57
Stutter ratio per detected SSR (%) 16.07 12.83 15.96 14.31 14.95 16.18 17.27 14.42 15.25 1.40
SSRs with coverage ≥10× and stutter ratio ≤0.5 1874 1756 1920 1755 1753 1874 1989 1922 1855.38 90.71
SSRs with coverage ≥10× and stutter ratio ≤0.5 (%)3 75.56 76.68 77.54 75.19 76.32 75.56 76.59 77.88 76.42 0.96

1Consistent reads are the MiSeq reads with identical forward and backward sequences.

2Detected SSRs (%) = Detected SSRs/3105.

3SSRs with coverage ≥10× and stutter ratio ≤0.5 (%) = SSRs with coverage ≥10× and stutter ratio ≤0.5/Detected SSRs.