Table 3.

Average runtimes of Arlequin and Hapl-o-Mat for estimation of haplotype frequencies from real population data

Sample size	Runtime Arlequin [s]	Runtime Hapl-o-Mat [s]	Ratio
5000	$242\pm 4$	$10\pm 2$	$24\pm 5$
20000	$6617\pm 971$	$39\pm 4$	$170\pm 30$
50000	$40539\pm 2,383$	$83\pm 10$	$488\pm 65$