Table 5.
Select genes from all four intersection sets that are underexpressed in the scale-biter
| Gene Group | Gene Name | Intersection Set | |||
|---|---|---|---|---|---|
| Apoptosis | |||||
| api5 | apoptosis inhibitor 5 | 48hpf | |||
| LOC107081897 | caspase-1-like | 15dpf | |||
| Bardet–Biedl syndrome | |||||
| bbs2 | Bardet-Biedl syndrome 2 | 48hpf | 96hpf | ||
| bbs5 | Bardet-Biedl syndrome 5 | 48hpf | |||
| Calcium Signaling | |||||
| LOC107088690 | annexin A3-like | 48hpf | |||
| capn5 | calpain 5 | 48hpf | |||
| calu | calumenin | 48hpf | |||
| Cell Adhesion | |||||
| cdh20 | cadherin 20, type 2 | 48hpf | |||
| cdh17 | cadherin 17, LI cadherin (liver-intestine) | 8dpf | |||
| cldn12 | claudin 12 | 48hpf | |||
| LOC107103695 | claudin-3-like | 48hpf | |||
| LOC107103700 | claudin-4-like | 48hpf | |||
| LOC107084763 | claudin-4-like | 8dpf | |||
| LOC107100707 | sialoadhesin-like | 15dpf | |||
| Cell Cycle | |||||
| cdca7 | cell division cycle associated 7 | 48hpf | |||
| ccny | cyclin Y | 48hpf | 96hpf | 8dpf | |
| Cytokine/Chemokine | |||||
| il6st | interleukin 6 signal transducer | 48hpf | 96hpf | 15dpf | |
| LOC107089554 | interleukin-21 receptor-like | 8dpf | |||
| LOC107096536 | C-C motif chemokine 3-like | 8dpf | |||
| Chaperone/Heat Shock | |||||
| LOC107082103 | dnaJ homolog subfamily B member 9-like | 48hpf | 96hpf | 8dpf | 15dpf |
| LOC107091513 | dnaJ homolog subfamily C member 16-like | 48hpf | 8dpf | ||
| LOC107095621 | dnaJ homolog subfamily C member 3-like | 48hpf | |||
| LOC107088964 | dnaJ homolog subfamily B member 5-like | 96hpf | |||
| Lipid Transport | |||||
| fabp6 | fatty acid binding protein 6, ileal | 48hpf | |||
| LOC107101094 | fatty acid-binding protein 10-A, liver basic-like | 48hpf | |||
| fabp3 | fatty acid binding protein 3, muscle and heart | 96hpf | 8dpf | ||
| LOC107096181 | fatty acid-binding protein, brain-like | 96hpf | 8dpf | ||
| LOC107081410 | fatty acid-binding protein, heart-like | 96hpf | 15dpf | ||
| LOC107086290 | fatty acid-binding protein, liver-type-like | 8dpf | |||
| LOC107082973 | apolipoprotein A-IV-like | 8dpf | |||
| LOC107095516 | apolipoprotein Eb-like | 8dpf | |||
| Growth Factor | |||||
| sh2d3c | SH2 domain containing 3C | 8dpf | |||
| BMP | |||||
| LOC107089450 | activin receptor type-2B-like | 48hpf | 96hpf | ||
| Matrix | |||||
| LOC107082466 | cartilage acidic protein 1-like | 48hpf | 96hpf | 15dpf | |
| LOC107093562 | collagen alpha-1(XXVIII) chain-like | 48hpf | |||
| LOC107094934 | collagen alpha-2(I) chain-like | 96hpf | |||
| LOC107086858 | collagen alpha-4(IV) chain-like | 8dpf | |||
| LOC107097307 | disintegrin and metalloproteinase domain-containing protein 10-like | 48hpf | |||
| fsd1 | fibronectin type III and SPRY domain containing 1 | 48hpf | |||
| fbln2 | fibulin 2 | 48hpf | 96hpf | 8dpf | 15dpf |
| plekhg1 | pleckstrin homology and RhoGEF domain containing G1 | 48hpf | |||
| LOC107097201 | integrin alpha-D-like | 96hpf | |||
| Muscle | |||||
| myo7a | myosin VIIA | 48hpf | |||
| LOC107097407 | myosin-7B-like | 48hpf | 96hpf | ||
| LOC107087696 | myosin-11-like | 8dpf | |||
| Tgf-beta | |||||
| tbrg4 | transforming growth factor beta regulator 4 | 48hpf | |||
| Transciption Factor | |||||
| irx6 | iroquois homeobox 6 | 48hpf | |||
| gata6 | GATA binding protein 6 | 8dpf | |||
| LOC107090297 | GATA zinc finger domain-containing protein 14-like | 15dpf | |||
| Wnt | |||||
| fzd9 | frizzled class receptor 9 | 48hpf | |||
| wnt2b | wingless-type MMTV integration site family member 2B | 48hpf | |||
| LOC107090002 | dixin-A-like | 96hpf | 8dpf | ||
| LOC107098026 | dickkopf-related protein 3-like | 15dpf | |||
| Other | |||||
| LOC107101384 | adipocyte plasma membrane-associated protein-like | 48hpf | |||
| clptm1 | cleft lip and palate associated transmembrane protein 1 | 48hpf | |||
| fkbp2 | FK506 binding protein 2 | 48hpf | |||
| foxj3 | forkhead box J3 | 48hpf | |||
| oraov1 | oral cancer overexpressed 1 | 48hpf | 8dpf | 15dpf | |
| smarcd2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 | 48hpf | |||
| LOC107105123 | syndecan-2-like | 48hpf | |||
| LOC107087936 | transcription regulator protein BACH1-like | 96hpf | |||
| LOC107083667 | alkaline phosphatase-like | 8dpf | |||
| setd6 | SET domain containing 6 | 48hpf | 96hpf | 8dpf | 15dpf |
| ptgr2 | prostaglandin reductase 2 | 15dpf | |||
| LOC107094401 | kallikrein-7-like | 15dpf | |||
Shown are pupfish gene names with zebrafish gene names in parentheses