Table 6.

Select genes from all four intersection sets that are overexpressed in the durophage

Gene Group	Gene Name	Intersection Set
Apoptosis
LOC107095016 (aifm4)	apoptosis-inducing factor 3-like	48hpf	96hpf	8dpf	15dpf
LOC107104525	apoptosis-stimulating of p53 protein 2-like			8dpf
bag1	BCL2 associated athanogene 1	48hpf
LOC107103519	caspase recruitment domain-containing protein 8-like				15dpf
Calcium Signaling
anxa1	annexin A1	48hpf
capn3	calpain 3	48hpf
capn5	calpain 5	48hpf
Cell Adhesion
LOC107095872 (cdh4)	cadherin-4-like	48hpf
LOC107093297	claudin-4-like	96hpf
Cytokine/Chemokine
tnfaip3	TNF alpha induced protein 3	48hpf	96hpf	8dpf
Chaperone/Heat Shock
dnajc27	Hsp40	48hpf		8dpf
LOC107099519 (dnajc11)	dnaJ homolog subfamily C member 11-like	48hpf
Growth Factor
LOC107091872 (epha4b)	ephrin type-A receptor 3-like	48hpf
LOC107090696	ephrin type-B receptor 2-like	48hpf
LOC107086153	platelet-derived growth factor receptor-like protein			8dpf
Extracellular Matrix
LOC107102808	integrin beta-2-like	48hpf
LOC107088257	integumentary mucin A.1-like	48hpf
col16a1	collagen, type XVI, alpha 1			8dpf
thsd1	thrombospondin type 1 domain containing 1		96hpf
LOC107083667	alkaline phosphatase-like				15dpf
Muscle
myoz3	myozenin3				15dpf
Transcription Factors
atoh8	atonal bHLH transcription factor 8	48hpf
gatad2b	GATA zinc finger domain containing 2B	48hpf
ncoa1	nuclear receptor coactivator 1	48hpf	96hpf	8dpf
LOC107081391	nuclear receptor coactivator 1-like	48hpf	96hpf	8dpf	15dpf
six1	SIX homeobox 1	48hpf
six4	SIX homeobox 4	48hpf
Other
LOC107098473	von Willebrand factor A domain-containing protein 7-like	48hpf
LOC107084756	toll-like receptor 2 type-2				15dpf

Shown are pupfish gene names with zebrafish gene names in parentheses