Table 7.
Select genes from all four intersection sets that are underexpressed in the durophage
| Gene Group | Gene Name | Intersection Set | |||
|---|---|---|---|---|---|
| Apoptosis | |||||
| bag2 | BCL2 associated athanogene 2 | 48 hpf | |||
| LOC107082055 (casp8l2) | caspase-8-like | 48 hpf | |||
| Bardet–Biedl syndrome | |||||
| bbs12 | Bardet-Biedl syndrome 12 | 48 hpf | 96 hpf | ||
| Calcium Signaling | |||||
| anxa10 | annexin A10 | 48 hpf | |||
| LOC107089898 (camkk1a) | calcium/calmodulin-dependent protein kinase kinase 1-like | 96 hpf | 15 dpf | ||
| Cell Adhesion | |||||
| cd302 | CD302 molecule | 48 hpf | 96 hpf | ||
| LOC107104323 (bub1) | mitotic checkpoint serine/threonine-protein kinase BUB1-like | 48 hpf | |||
| LOC107097627 | protocadherin beta-16-like | 96 hpf | |||
| LOC107100986 (pcdh10b) | protocadherin-10-like | 96 hpf | |||
| LOC107105174 | cell adhesion molecule 2-like | 8dpf | |||
| Cell Cycle | |||||
| LOC107092486 (aunip) | aurora kinase A and ninein-interacting protein-like | 48 hpf | |||
| cdc20 | cell division cycle 20 | 48 hpf | |||
| cdca7l | cell division cycle associated 7-like | 48 hpf | 96 hpf | ||
| Cytokine/Chemokine | |||||
| LOC107085925 | C-C motif chemokine 25-like | 48 hpf | |||
| traf4 | TNF receptor associated factor 4 | 96 hpf | |||
| LOC107095001 (csf1ra) | macrophage colony-stimulating factor 1 receptor 1-like | 8dpf | |||
| LOC107090375 (csf1b) | uncharacterized (macrophage colony stimulating factor 1b) | 96 hpf | |||
| Chaperone/Heat Shock | |||||
| LOC107086201 | heat shock 70 kDa protein 12A–like | 48 hpf | |||
| Growth Factor | |||||
| LOC107082400 | endothelin B receptor-like | 48 hpf | |||
| LOC107086153 | platelet-derived growth factor receptor-like protein | 48 hpf | |||
| flt1 | fms-related tyrosine kinase 1 | 96 hpf | |||
| IFG signaling | |||||
| LOC107082691 (igfbp7) | insulin-like growth factor-binding protein 7 | 96 hpf | |||
| Matrix | |||||
| LOC107101414 | FRAS1-related extracellular matrix protein 2-like | 48 hpf | |||
| LOC107103703 | FRAS1-related extracellular matrix protein 2-like | 48 hpf | |||
| LOC107094308 | integrin beta-1-like | 48 hpf | |||
| pcolce2 | procollagen C-endopeptidase enhancer 2 | 48 hpf | |||
| otol1 | otolin 1 | 96 hpf | 8dpf | ||
| Muscle | |||||
| LOC107103762 (mybpha) | myosin-binding protein H-like | 8dpf | 15 dpf | ||
| BMP/Tgf-beta | |||||
| twsg1 | twisted gastrulation BMP signaling modulator 1 | 48 hpf | |||
| Transciption Factors | |||||
| dbx2 | developing brain homeobox 2 | 48 hpf | |||
| hes3 | hes family bHLH transcription factor 3 | 48 hpf | |||
| sall4 | spalt-like transcription factor 4 | 48 hpf | |||
| Wnt | |||||
| LOC107099028 (tmem88b) | transmembrane protein 88-like | 48 hpf | |||
| wnt1 | wingless-type MMTV integration site family member 1 | 48 hpf | |||
| wnt10b | wingless-type MMTV integration site family member 10b | 48 hpf | |||
| Other | |||||
| sipa1l3 | signal-induced proliferation-associated 1 like 3 | 48 hpf | 8dpf | ||
| tfpi2 | tissue factor pathway inhibitor 2 | 48 hpf | |||
| LOC107100889 | myeloid-associated differentiation marker homolog | 8dpf | |||
| LOC107104594 | TRPM8 channel-associated factor homolog | 8dpf | |||
| mos | v-mos Moloney murine sarcoma viral oncogene homolog | 15 dpf | |||
Shown are pupfish gene names with zebrafish gene names in parentheses