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. 2017 May 30;17:121. doi: 10.1186/s12862-017-0966-3

Table 2.

DNA sequence diversity of Bathymodiolus endosymbionts

Locus Sample localities
11°N 9°N GARa 7°S 11°S 17°S 23°S 32°S 38°S
16S rRNA encoding gene
(300 bp)
N b - 13,310 - 2008 7531 6688 1899 6400 3046
h c - 7 - 3 6 6 3 4 5
H d - 0.030 - 0.157 0.020 0.029 0.026 0.009 0.029
π e - 1.0E-04 - 5.3E-04 6.6E-05 9.5E-05 8.7E-05 3.0E-05 9.8E-05
COI Cytochrome C oxidase subunit I
(443 bp)
N 3294 3692 1583 2246 2157 2545 1029 2332 737
h 36 24 40 8 11 59 17 33 19
H 0.80 0.70 0.72 0.77 0.68 0.86 0.84 0.67 0.73
π 0.003 0.002 0.003 0.003 0.002 0.003 0.004 0.002 0.003
dnaK Chaperone protein
(469 bp)
N 2465 3100 2995 2362 2671 1876 1967 2367 2300
h 5 39 23 22 19 45 4 33 43
H 0.42 0.78 0.62 0.80 0.67 0.65 0.45 0.82 0.83
π 0.001 0.003 0.002 0.003 0.002 0.002 0.001 0.003 0.003
pgi Glucose-6-phosphate isomerase
(441 bp)
N 1966 2986 2466 1972 1918 2668 1339 3747 1528
h 35 30 57 16 16 70 11 151 103
H 0.82 0.85 0.85 0.67 0.70 0.87 0.46 0.91 0.91
π 0.004 0.004 0.004 0.003 0.003 0.004 0.002 0.008 0.006
pykF Pyruvate kinase
(404 bp)
N 2234 3051 3475 2770 3020 2629 1602 3150 1934
h 39 37 57 32 65 43 21 87 39
H 0.75 0.81 0.77 0.74 0.90 0.79 0.79 0.88 0.78
π 0.003 0.006 0.005 0.006 0.006 0.003 0.004 0.006 0.003
rpoD RNA polymerase, sigma D factor
(388 bp)
N 3326 4328 3901 3650 4090 3717 2403 4797 2199
h 30 26 25 26 22 42 27 18 42
H 0.84 0.76 0.81 0.80 0.80 0.64 0.70 0.65 0.68
π 0.004 0.003 0.004 0.004 0.004 0.002 0.004 0.002 0.003
soxA Sulfur oxidation protein A
(361 bp)
N 4196 5036 4085 3763 4652 3370 2715 3879 4105
h 6 9 12 7 3 5 8 4 6
H 0.45 0.70 0.70 0.47 <0.01 0.34 0.03 0.03 0.17
π 0.001 0.001 0.002 0.001 <0.001 0.001 <0.001 <0.001 <0.001

aGalápagos Rift

bNumber of sequence reads

cNumber of distinct DNA sequences estimated from the data with 1% of error-correction

dDiversity of sequences estimated from the data with 1% of error-correction

eNucleotide diversity estimated from the data with 1% of error-correction