Table 2.
Top two SNPs associated with milk yield near the RUNX2 gene
| SNP | Chr | Position | MAF | Model | β_A (SE) | P-value | β_D (SE) | P-value | β_I (SE) | P-value |
|---|---|---|---|---|---|---|---|---|---|---|
| Hapmap48809-BTA-55698 | 23 | 17,275,448 | 0.15 | Two-step | 153.4 (33.0) | 3.33 × 10−6 | 197.1 (37.6) | 1.56 × 10−7 | −3.64 (18.0) | 0.84 |
| A | 223.6 (51.8) | 1.57 × 10−5 | 255.2 (44.7) | 1.17 × 10−8 | −1.54 (23.8) | 0.95 | ||||
| A + D + I | 212.7 (51.6) | 3.82 × 10−5 | 241.7 (45.3) | 9.54 × 10−8 | −0.52 (25.5) | 0.98 | ||||
| BovineHD2300004730 | 23 | 18,600,456 | 0.10 | Two-step | 207.3 (47.6) | 1.31 × 10−5 | 273.5 (52.1) | 1.54 × 10−7 | 10.31 (21.3) | 0.63 |
| A | 206.2 (67.6) | 2.29 × 10−3 | 353.6 (62.3) | 1.43 × 10−8 | −3.43 (28.8) | 0.91 | ||||
| A + D + I | 200.6 (67.5) | 2.96 × 10−3 | 340.4 (62.9) | 6.33 × 10−8 | 7.52 (30.8) | 0.81 |
Chr chromosome, MAF minor allele frequency, β regression coefficient, SE standard error