Table 2.
Percentage identity matrices (nucleotide and deduced amino acid) of VP6 gene
| Strain | Human | Bovine | Porcine | Human/India | Study Samples | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bristol | BCN9 | OH567 | Wu82 | BS347 | Jajeri | Toyama | RVC | V460 | V508 | ND-056 | ND-061 | ND-204 | ND-237 | ND-240 | ND-398 | |
| Bristol | 92.10% | 96.90% | 92.10% | 96.90% | 92.40% | 79.00% | 79.30% | 92.40% | 92.10% | 99.00% | 99.00% | 98.70% | 99.00% | 98.70% | 98.70% | |
| BCN9 | 97.80% | 92.70% | 97.60% | 93.20% | 98.50% | 84.80% | 84.20% | 99.10% | 98.80% | 96.70% | 96.70% | 97.70% | 96.70% | 97.70% | 97.70% | |
| OH567 | 92.10% | 90.60% | 93.80% | 97.50% | 93.00% | 78.70% | 79.30% | 93.50% | 92.70% | 95.30% | 95.30% | 96.30% | 95.30% | 96.30% | 96.30% | |
| Wu82 | 96.70% | 93.30% | 94.20% | 92.10% | 97.90% | 84.50% | 84.50% | 98.50% | 97.60% | 95.30% | 95.30% | 97.10% | 95.30% | 97.10% | 97.10% | |
| BS347 | 91.10% | 90.50% | 93.00% | 97.60% | 93.00% | 79.80% | 79.80% | 93.50% | 93.20% | 96.90% | 96.90% | 96.90% | 96.90% | 96.90% | 96.90% | |
| Jajeri | 92.60% | 95.20% | 90.40% | 94.20% | 92.50% | 84.80% | 84.80% | 98.80% | 98.50% | 98.60% | 98.60% | 99.70% | 98.60% | 99.70% | 99.70% | |
| Toyama | 68.60% | 67.10% | 62.30% | 66.10% | 61.40% | 66.10% | 88.90% | 84.80% | 85.10% | 77.00% | 77.00% | 78.70% | 77.00% | 78.70% | 78.70% | |
| RVC | 66.60% | 67.10% | 60.40% | 64.20% | 61.40% | 66.10% | 88.00% | 84.80% | 83.90% | 77.00% | 77.00% | 78.70% | 77.00% | 78.70% | 78.70% | |
| V460 | 95.30% | 94.80% | 95.30% | 92.90% | 91.10% | 95.30% | 64.80% | 64.80% | 99.10% | 90.90% | 90.90% | 93.00% | 90.90% | 93.00% | 93.00% | |
| V508 | 96.20% | 92.00% | 96.20% | 91.60% | 95.80% | 93.50% | 63.50% | 61.60% | 92.90% | 90.60% | 90.60% | 92.70% | 90.60% | 92.70% | 92.70% | |
| ND-056 | 96.20% | 95.10% | 96.00% | 95.70% | 96.20% | 97.60% | 67.60% | 66.60% | 96.40% | 95.10% | 100.00% | 98.60% | 100.00% | 98.60% | 98.60% | |
| ND-061 | 96.20% | 95.10% | 96.00% | 95.70% | 96.20% | 97.60% | 67.60% | 66.60% | 96.40% | 95.10% | 100.00% | 98.60% | 100.00% | 98.60% | 98.60% | |
| ND-204 | 95.40% | 93.20% | 93.20% | 95.30% | 92.10% | 96.40% | 61.40% | 60.20% | 95.20% | 96.60% | 97.20% | 97.20% | 97.20% | 100.00% | 100.00% | |
| ND-237 | 96.20% | 95.10% | 96.00% | 95.70% | 96.20% | 97.60% | 67.60% | 66.60% | 96.40% | 95.10% | 100.00% | 100.00% | 98.60% | 98.60% | 97.20% | |
| ND-240 | 95.40% | 93.20% | 93.20% | 95.30% | 92.10% | 96.40% | 61.40% | 60.20% | 95.20% | 96.60% | 97.20% | 97.20% | 100.00% | 97.20% | 100.00% | |
| ND-398 | 95.40% | 93.20% | 93.20% | 95.30% | 92.10% | 96.40% | 61.40% | 60.20% | 95.20% | 96.60% | 97.20% | 97.20% | 100.00% | 97.20% | 100.00% | |
Identity matrices of the nucleotide (above the diagonal) and deduced amino acid (below the diagonal) among human, porcine and bovine group C rotavirus strains. Reference strains from different geographical locations are used in the analysis