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. 2017 May 31;7:227. doi: 10.3389/fcimb.2017.00227

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Copyright © 2017 Pham, Nosala, Scott, Nguyen, Hagen, Starcevich and Dawson.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Encystation and oxidative stress genes are the top differentially expressed genes associated with the in vivo foci transcriptomes. In (A), genes that are greater than 10-fold differentially expressed in the in vivo foci transcriptomes relative to in vitro culture are ranked and colored according to cellular process (e.g., encystation). Genes differentially expressed greater than 2-fold are ranked according to the number that are associated with a particular cellular process in the in vivo foci transcriptome (B) and the in vitro (TYDK) transcriptome (C).