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. Author manuscript; available in PMC: 2018 Feb 14.
Published in final edited form as: J Chem Theory Comput. 2017 Jan 5;13(2):926–934. doi: 10.1021/acs.jctc.6b00982

Figure 3.

Figure 3

Schematic representation of the 4-state HMM of AAA. A1 (red), A2 (blue), A3 (yellow). Percentages indicate the equilibrium population of each state; the width of the arrows is proportional to the transition rate between the states which are also indicated in μs−1 units. Shading indicates the distribution of the simulation data on the TICA plane.