Table III.

miRNA-mRNA pairs with inversely correlated expression levels.

miRNA	Regulation (miRNA)	Target counts	Target mRNA
hsa-miR-188-5p	Up	59	AEBP2, ATP6V1G1, BAG5, BCL9, BET1, BIN2, CAPN2, CD80, CDC25B, CDON, CLU, CPSF2, CYP1A1, CYYR1, DAAM1, DLC1, FBXO11, FBXO9, FNBP1, FNBP4, FUBP3, GLI2, HMGB1, IL28RA, IL2RA, ING5, KPTN, MX2, MYT1, N6AMT1, PAX8, PCDH9, PER2, PLVAP, PROS1, PSMF1, RPS6KA3, SCN3A, SH3BGRL2, SLC22A3, SPG20, SPOP, SYNJ2BP, SYT11, SYTL2, TACC1, TCL1A, TIAM1, TSN, UPF2, UPF3A, USP14, USP47, UVRAG, ZNF185, ZNF451, ITLN1, GEMIN4, PCNA
hsa-miR-1183	Up	9	AEBP2, AIM1, ARG2, CRIM1, DARS, F8, POT1, ROCK2, SLC9A6
hsa-miR-18a	Up	63	TP53, GEMIN4, CD8A, ADCY1, AEBP2, AIM1, C1RL, C9orf5, CBX7, CLOCK, CNTN4, CRELD1, CRIM1, CTLA4, DAAM2, DUSP3, EFS, EGLN2, EYA4, FBXO9, FNBP1, GAS7, GFOD1, IGF1, IL28RA, INSR, ITIH5, KIF3B, MC2R, MS4A2, NDUFS1, NEDD4, NPY1R, OSTM1, PCNP, PCSK2, PLEKHG1, POT1, POU6F1, PRMT6, PSMF1, RERG, RPS6KA3, RRAS, SH3BGRL2, SH3BP4, SLC22A3, SLC6A7, SON, SOX8, SRI, STARD7, STAT6, TSC1, TXNIP, UQCRB, USP24, VPS4B, WASF2, ZHX2, ZNF169, ZNF430, ZNF451
hsa-miR-7	Up	94	AIM1, ARID2, ATP6V1G1, BAG5, C1GALT1, CAMK1G, CAMK2D, CAPN2, CBX7, CD5, CD8A, CDC14B, CDON, CISH, CLNS1A, COLEC12, CRIM1, CRY2, CXCL12, DCK, DMXL1, EVC, FAM20B, FBLN5, FBXO21, GAS7, GATA4, GATA6, GGA2, GNG4, GRIK3, HN1, IGF1, INHBB, INSR, ITIH5, JAM3, KIF3B, LDB3, LGALS8, LIFR, LUC7L2, MAOA, MC2R, MEIS2, MFAP4, MIPOL1, MRPS36, N6AMT1, NEDD4, NEIL1, PARD6G, PAX8, PIGH, PIK3R3, POLE3, POU6F1, PPP2R2B, PPP2R3A, ProSAPiP1, PSORS1C2, PUM2, RAB5B, RAP1A, RFC5, RIMS3, ROCK2, RPS6KA3, SEMA6A, SLC22A3, SLC9A6, SNAP29, SQSTM1, SS18L1, STEAP2, SYNJ2BP, SYNPR, TCERG1, TCL1A, TGFA, THAP6, TIAM1, TMOD1, TMOD2, TOX, TRDN, TRIM52, TRPV1, TSC1, TSN, UTRN, ZFYVE21, ZNF185, ZNF319
hsa-miR-590-5p	Up	49	ANXA1, BBS7, C14orf101, CAMK2D, CAPN2, CNTFR, COL4A4, CRIM1, CTCF, CUBN, DNAJA2, DNM1L, ENPP4, FAT3, FBXO11, FUBP3, FZD6, GFOD1, INSR, IRAK1BP1, ITIH5, KIAA0240, KL, KLF8, LIFR, MAOA, MATN2, MS4A2, OLFM3, PCNA, PELI1, PER2, POT1, PPP1R3D, RABIF, REPS1, RIOK1, RNF38, RPS6KA3, SLMAP, SMARCE1, SRI, TIAM1, TPK1, TRUB1, TSC1, USP24, WSB1, ZNF295
hsa-let-7d	Up	55	TAF9, CLU, IGF1, XPO1, TP53, ACTA2, CISH, IFNG, FMR1, ABCB9, ADCY9, AIM1, C14orf28, C1QTNF1, C1RL, CALM1, CD80, CDC14B, CDC25B, CDCA8, COL14A1, COL4A4, CRY2, DPF2, DUSP19, ENPP4, FRAS1, GAS7, GFOD1, GGA2, GNG5, ICOS, IL28RA, INSR, KIAA1609, LDB3, LEPROTL1, LIFR, MC2R, MTHFD2, MUC4, P2RX1, PRDM12, PSORS1C2, ROBO4, RPS6KA3, SCARA3, SPOP, SYT11, TNFSF10, TPK1, TRIM39, TSC1, USP24, UTRN
hsa-let-7f	Up	68	ABCB9, ADCY1, ADCY9, AIM1, ATP6V1G1, BMPR1A, C14orf28, C1QTNF1, C1RL, CALM1, CD80, CD8A, CDC14B, CDC25B, CDCA8, CISH, CLU, COL14A1, COL4A4, COL4A5, CRY2, DIABLO, DLC1, DPF2, DUSP19, EGLN2, ENPP4, FMR1, FRAS1, GALR1, GAS7, GFOD1, GGA2, GNG5, ICOS, IFNG, IGF1, IL28RA, IL2RA, INSR, KIAA1609, LDB3, LEPROTL1, MC2R, MEIS2, MTHFD2, MUC4, NTRK3, P2RX1, PAX8, PSORS1C2, RIMS3, RNF38, ROBO4, RPS6KA3, SCARA3, SIPA1L2, SPOP, SYNJ2BP, SYT11, TNFSF10, TP53, TPK1, TSC1, USP24, USP47, UTRN, XPO1
hsa-miR-130b	Up	73	ADCY1, ADD2, AIG1, ANK2, BAI3, C1GALT1, CALM2, CAMK2D, CCR6, CDON, CLOCK, CNTN4, COL4A4, CRY1, CXCL12, DEDD2, DNM1L, DOK5, DUSP19, EFS, ENPP4, EPHB4, FAM20B, FAT3, FBXO9, FMR1, FNBP1, FZD6, GGA2, HOXA3, IGF1, IL28RA, INHBB, ITPR1, LDB3, LEPROTL1, METAP1, MLLT10, MRRF, MTMR4, MYT1, NEIL1, PCYOX1, PELI1, PLSCR4, POU6F1, PPIA, PPP1R12A, PTPRG, RAB5B, RNF38, RPS6KA3, RYR2, SCARA3, SCN3A, SLC9A6, SLMAP, SOX21, SPG20, SRPX, STOM, TACC1, TBC1D8, TGFA, THAP6, TSC1, TXNIP, USP47, VPS4B, WDR1, WRN, ZAK, ZNF430
hsa-miR-130b	Up	73	ADCY1, ADD2, AIG1, ANK2, BAI3, C1GALT1, CALM2, CAMK2D, CCR6, CDON, CLOCK, CNTN4, COL4A4, CRY1, CXCL12, DEDD2, DNM1L, DOK5, DUSP19, EFS, ENPP4, EPHB4, FAM20B, FAT3, FBXO9, FMR1, FNBP1, FZD6, GGA2, HOXA3, IGF1, IL28RA, INHBB, ITPR1, LDB3, LEPROTL1, METAP1, MLLT10, MRRF, MTMR4, MYT1, NEIL1, PCYOX1, PELI1, PLSCR4, POU6F1, PPIA, PPP1R12A, PTPRG, RAB5B, RNF38, RPS6KA3, RYR2, SCARA3, SCN3A, SLC9A6, SLMAP, SOX21, SPG20, SRPX, STOM, TACC1, TBC1D8, TGFA, THAP6, TSC1, TXNIP, USP47, VPS4B, WDR1, WRN, ZAK, ZNF430
hsa-miR-324-3p	Up	83	ADAMTS17, ADCY1, ANKRD11, ARHGAP10, ARHGEF17, BARHL1, BRD2, C1QTNF1, CAMK1G, CBX7, CD34, CD5, CD8A, CDC14B, CDC25B, CLU, COL14A1, COL21A1, CRY2, CXCL12, CYGB, DIABLO, DLC1, DNAJB2, EFS, EGLN2, ELTD1, EPHB4, ESAM, FBXO9, FNBP1, GAS7, GATA4, GFOD1, GGA2, GRIK3, HOXD4, KCND1, KCNS1, KIAA1609, KIF3B, LEPROTL1, LGALS8, LUC7L2, MYLK2, MYT1, NGFR, NTRK3, NUDC, PAX8, PIK3R3, PODN, PPAP2B, PPP1R3D, PRKAR1A, ProSAPiP1, PSMF1, PSORS1C2, RAB5B, RARG, RBM3, RGS3, RGS6, RIMS3, RPL13A, RPS6KA3, SLAMF7, SLC6A7, SOX21, SOX8, SS18, SYT11, TRPV3, TSC1, USP22, USP47, UVRAG, VASP, WASF2, YWHAG, ZNF319, ZNF451, ZNF510
hsa-miR-182	Down	84	CDKN1A, MYCN, BAX, EGR1, DOK4, MBNL2, ARF4, PCDH8, XPR1, DDAH1, GALNT2, KITLG, PAPPA, KCNK10, SLC2A3, THBS1, THBS2, ZIC3, GPR68, HOOK3, ADAM9, NAV1, LHFPL2, SIRPB1, VAT1, YKT6, KHDRBS3, MAL2, SLC36A4, COL5A1, SLC31A1, ASB6, CYBB, RDH10, DDX3X, DLAT, FBLN1, C6orf89, MRAS, NLGN4Y, LPHN1, MESDC2, SYNE2, FN1, KIAA0368, NUDT13, D4S234E, KCNH5, HTR2C, KIAA2022, IL16, KIF5C, LRP1, MCL1, MKLN1, OLR1, PC, CECR1, WHSC1L1, PCDHB4, SH3GLB2, THAP10, USP31, PTPRE, NTN4, RNASE6, RNASEL, RRBP1, SCNN1G, SLC11A1, SLC22A5, SRPK1, SSTR2, TBL1X, SLC35A2, TNFSF9, CCND2, NAV2, ACVR1B, SYNGR2, GCM2, KCNK6, KIF23, KIAA0247
hsa-miR-1825	Down	6	CDH2, ABCA1, PANX1, SERPINE1, NLK, C2orf3
hsa-miR-139-5p	Down	80	MBNL2, DDX3X, ABCA1, FOS, GALNT3, ENAH, TBL1X, PTPRU, DPYSL4, YKT6, ABHD2, BAZ2A, SLC6A14, SLC35A4, MAL2, AP2M1, CCR5, COL11A1, CX3CR1, RDH10, ARX, DSC2, EFNA3, EREG, C6orf89, MRAS, FN1, DDAH1, NR5A1, GALNT2, D4S234E, GLI3, GNAL, USP25, NME7, EHD4, HOXA7, KIAA2022, IGFBP5, HCN1, IL16, JAK3, KCNA3, KIF5C, LHCGR, MARK1, MBNL1, MCL1, KITLG, NF2, PPAT, DIRAS2, BCAS3, PPP2R4, DOK4, PRKCA, CYP4F11, RFXAP, RNASEL, RPL15, SCD, SMOC1, SLC39A8, SGCD, SRPK1, TGFB1, THBS1, TPM3, UFD1L, CUL3, PPFIBP1, KIAA1755, STX11, TNFRSF10D, CCND2, SLC28A2, GCM2, TM9SF4, SPOCK2, TAGLN2
hsa-miR-193b	Down	47	SOX9, MCL1, BCL2L10, STMN1, MKLN1, PTPRU, ABHD2, BAZ2A, AP2M1, SLC31A1, CRK, CX3CR1, E2F1, DDAH1, KCNE1L, GALNT2, TNFRSF21, GCLC, APOA2, IGFBP5, MMP14, MYCN, NF2, NUMA1, SERPINE1, RNF141, PPAT, DIRAS2, PPP2R4, PRKCA, KIAA1199, PTPRE, SGCD, SLC20A2, SOX12, TRAF1, ZIC3, AXIN2, HAVCR2, KIAA1755, TNFRSF10B, CCND2, NAV1, SOCS3, ACVRL1, BCAR1, KIAA0195