Table 3. Gene-level p-values for the association tests of candidate genes with SBP in the genetic analysis 19 data analysis.
Gene | SKAT | SKAT-O | Burden | SMT | ||||
---|---|---|---|---|---|---|---|---|
All SNVs | Rare SNVs | All SNVs | Rare SNVs | All SNVs | Rare SNVs | All SNVs | Rare SNVs | |
INSR | 0.51 | 0.73 | 0.72 | 0.76 | 0.27 | 0.70 | 0.14 | 0.07 |
RRAS | 0.33 | 0.32 | 0.49 | 0.46 | 0.59 | 0.34 | 0.26 | 0.18 |
ZNF101 | 0.94 | 0.93 | 0.91 | 0.87 | 0.97 | 0.72 | 0.98 | 0.97 |
ELAVL3 | 0.46 | 0.44 | 0.29 | 0.42 | 0.12 | 0.27 | 0.76 | 0.74 |
RGL3 | 0.21 | 0.13 | 0.32 | 0.22 | 0.46 | 0.22 | 0.03 | 0.02 |
AMH | 0.30 | 0.24 | 0.46 | 0.38 | 0.65 | 0.73 | 0.18 | 0.12 |
DOT1L | 0.59 | 0.60 | 0.78 | 0.79 | 0.43 | 0.73 | 0.70 | 0.51 |
PLEKHJ1 | 0.59 | 0.50 | 0.79 | 0.72 | 0.33 | 0.67 | 0.18 | 0.13 |
SF3A2 | 0.50 | 0.36 | 0.70 | 0.54 | 0.41 | 0.97 | 0.23 | 0.15 |
Unadjusted p-values from gene-level genetic association analysis of all common and rare SNVs (“all SNVs”), and only rare SNVs (“rare SNVs”) in 9 candidate genes with SBP. Adjustments for multiple testing of all SNVs in SMTs in a gene were done using the BH-correction.