(A) RT-qPCR measurement of midguts expressing Luc RNAi or trpA1 RNAi in ISCs for 6d, with the last day feeding on normal food or paraquat. rp49 is used for normalization. The data are presented as mean ± SEM for three technical replicates. While expression of JAK/ Stat pathway ligands upd1 and upd2 remains unaffected, multiple RTK ligands (spi, krn, vn, pvf1, pvf3, dilp3, highlighted by gray square boxes) are down-regulated by trpA1 RNAi. (B) RT-qPCR measurement of midguts expressing Luc RNAi or trpA1 RNAi in ISCs for 9d, with the last 2d feeding on normal food or paraquat. rp49 is used for normalization. The data are presented as mean ± SEM for three technical replicates. Note that only spi, pvf1, and dilp3 are consistently down-regulated in trpA1 RNAi groups in both (A) and (B). Different trends of krn, vn, and pvf3 expression observed in (B) compared to (A) might suggest a delay, rather than reduction of these ligands by trpA1 RNAi. (C) RT-qPCR measurement of midguts expressing Luc RNAi or SERCA RNAi in ISCs for 1d. Such early time point is chosen empirically to allow for efficient knockdown and avoid confounding effects of signaling pathway cross-activation at later stages of ISC proliferation. rp49 is used for normalization. The data are presented as mean ± SEM for three technical replicates.