Table 6.
SBML components and the main types of SBO terms that may be assigned to them. The identifiers of the highestlevel SBO terms in each branch are provided for guidance, but actual values used for sboTerm attributes should be more specific child terms within these branches. Note that the important aspect here is the set of specific SBO identifiers, not the SBO term names, because the names may change as SBO continues to evolve. See text for further explanations.
| SBML Component | SBO Branch | Branch Identifier |
|---|---|---|
| Model | interaction | SBO:0000231 |
| FunctionDefinition | mathematical expression | SBO:0000064 |
| Compartment | material entity | SBO:0000240 |
| Species | material entity | SBO:0000240 |
| Reaction | interaction | SBO:0000231 |
| Parameter | quantitative parameter | SBO:0000002 |
| SpeciesReference | participant role | SBO:0000003 |
| ModifierSpeciesReference | participant role | SBO:0000003 |
| KineticLaw | rate law | SBO:0000001 |
| LocalParameter | quantitative parameter | SBO:0000002 |
| InitialAssignment | mathematical expression | SBO:0000064 |
| AlgebraicRule | mathematical expression | SBO:0000064 |
| AssignmentRule | mathematical expression | SBO:0000064 |
| RateRule | mathematical expression | SBO:0000064 |
| Constraint | mathematical expression | SBO:0000064 |
| Event | interaction | SBO:0000231 |
| Trigger | mathematical expression | SBO:0000064 |
| Priority | mathematical expression | SBO:0000064 |
| Delay | mathematical expression | SBO:0000064 |
| EventAssignment | mathematical expression | SBO:0000064 |