Table 1.
Coverage | ||||||
---|---|---|---|---|---|---|
5x | 10x | 20x | 30x | 40x | ||
FastGT genotype calls | AA | 28,734,597 (98.943%) | 29,025,104 (99.943%) | 29,027,872 (99.952%) | 29,025,157 (99.943%) | 29,011,146 (99.895%) |
AB | 6,140 (0.021%) | 12,107 (0.042%) | 13,567 (0.047%) | 11,007 (0.038%) | 10,898 (0.038%) | |
BB | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | |
NC | 300,941 (1.036%) | 4,467 (0.015%) | 239 (0.001%) | 5,514 (0.019%) | 19,634 (0.068%) |
“A” denotes the allele from the reference genome, and “B” denotes the alternative allele. “NC” is no-call.