Table 1.

Genotypes retrieved from the simulated reads generated from the reference genome.

		Coverage
		5x	10x	20x	30x	40x
FastGT genotype calls	AA	28,734,597 (98.943%)	29,025,104 (99.943%)	29,027,872 (99.952%)	29,025,157 (99.943%)	29,011,146 (99.895%)
	AB	6,140 (0.021%)	12,107 (0.042%)	13,567 (0.047%)	11,007 (0.038%)	10,898 (0.038%)
	BB	0 (0%)	0 (0%)	0 (0%)	0 (0%)	0 (0%)
	NC	300,941 (1.036%)	4,467 (0.015%)	239 (0.001%)	5,514 (0.019%)	19,634 (0.068%)

“A” denotes the allele from the reference genome, and “B” denotes the alternative allele. “NC” is no-call.