Table 2.
Concordance between the autosomal genotypes of two individuals from the Platinum dataset and bi-allelic FastGT genotypes called from the same individuals.
| Platinum genotype calls | ||||
|---|---|---|---|---|
| AA | AB | BB | ||
| FastGT genotype calls | AA | 54,246,425 (93.39%) | 987 (0.00%) | 68 (0.00%) |
| AB | 20,041 (0.03%) | 2,427,315 (4.18%) | 1,516 (0.00%) | |
| BB | 2,261 (0.00%) | 156 (0.00%) | 1,245,902 (2.14%) | |
| NC | 126,513 (0.22%) | 1,787 (0.00%) | 10,376 (0.02%) | |
| concordant (%) | 99.96% | 99.95% | 99.87% | |
The reference allele is denoted by “A” and the alternative allele is denoted by “B” denotes the alternative allele.