Table 1.
Gene name | Locus name | Transcripts | Coordinate (5′–3′) | Transcript length (bp) | CDS (bp) | Protein | Localization | ||
---|---|---|---|---|---|---|---|---|---|
Length (aa) | MW (kDa) | pI | |||||||
MtGLYI-1 | Medtr1g022325 | Medtr1g022325.1 | 7056631–7055156 | 1683 | 1287 | 428 | 47.38 | 5.66 | Cha,b, Cya,b |
MtGLYI-2 | Medtr1g115170 | Medtr1g115170.1 | 51845699–51846145 | – | 447 | 148 | 16.76 | 4.69 | Cya,b |
MtGLYI-3 | Medtr2g005880 | Medtr2g005880.1 | 372509–376355 | 4086 | 546 | 181 | 20.60 | 5.26 | ExCa, Cya, Chb |
MtGLYI-4 | Medtr2g023500 | Medtr2g023500.1 | 8303233–8298020 | 5211 | 864 | 287 | 32.10 | 5.26 | Cya,b |
MtGLYI-5 | Medtr2g103460 | Medtr2g103460.1 | 44546518–44544702 | 2214 | 516 | 171 | 19.16 | 5.93 | Cya,b |
MtGLYI-6 | Medtr2g103490 | Medtr2g103490.1 | 44556161–44555344 | 815 | 516 | 171 | 19.42 | 5.04 | Cya,b, Nub |
MtGLYI-7 | Medtr3g110185 | Medtr3g110185.1 | 51187554–51183426 | 4129 | 2466 | 821 | 92.26 | 8.06 | Nua, Cyb |
MtGLYI-8 | Medtr4g011020 | Medtr4g011020.1 | 2571851–2573439 | 1992 | 528 | 175 | 20.01 | 5.87 | Cya,b, Nub |
MtGLYI-9 | Medtr4g039890 | Medtr4g039890.1 | 14172120–14173530 | 1411 | 744 | 247 | 27.56 | 7.33 | Cya,b |
MtGLYI-10 | Medtr4g057685 | Medtr4g057685.1 | 21216977–21211083 | 8202 | 705 | 234 | 26.69 | 9.49 | Mta, Chb,c |
Medtr4g057685.2 | 21216757–21211083 | 8202 | 561 | 186 | 20.95 | 5.33 | Cya, Nub | ||
MtGLYI-11 | Medtr4g063500 | Medtr4g063500.1 | 23518703–23522474 | 4097 | 426 | 141 | 15.88 | 6.24 | Cya,b |
Medtr4g063500.2 | 23518703–23522474 | 4097 | 387 | 128 | 14.40 | 6.52 | Cya,b | ||
MtGLYI-12 | Medtr4g114080 | Medtr4g114080.1 | 46953345–46952651 | 1028 | 507 | 168 | 19.23 | 5.13 | ExCa, Nua, Chb |
MtGLYI-13 | Medtr4g125860 | Medtr4g125860.1 | 52258825–52261268 | 3392 | 582 | 193 | 21.65 | 7.32 | Mta,b, Chb,c |
MtGLYI-14 | Medtr4g132260 | Medtr4g132260.1 | 55265824–55262670 | 3155 | 846 | 281 | 31.47 | 4.73 | Cya,b |
MtGLYI-15 | Medtr4g132270 | Medtr4g132270.1 | 55272349–55269373 | 2977 | 915 | 304 | 33.95 | 4.98 | Cya,b |
Medtr4g132270.2 | 55271711–55269373 | 2977 | 846 | 281 | 31.55 | 4.88 | Cya,b | ||
MtGLYI-16 | Medtr5g006360 | Medtr5g006360.1 | 881390–880412 | 1234 | 423 | 140 | 15.86 | 6.35 | Cya, Nub |
MtGLYI-17 | Medtr5g006370 | Medtr5g006370.1 | 883839–883046 | 1856 | 420 | 139 | 15.66 | 5.48 | Nua, Mta, Cya, Chb |
Medtr5g006370.2 | 883585–883046 | 1856 | 336 | 111 | 12.53 | 5.11 | Mta, Cya,b | ||
Medtr5g006370.3 | 883839–883162 | 1856 | 390 | 129 | 14.59 | 6.3 | Nua, Mta, Cyb | ||
MtGLYI-18 | Medtr5g009740 | Medtr5g009740.1 | 2433440–2432537 | 1209 | 351 | 116 | 12.82 | 7.57 | Mta, Chb |
MtGLYI-19 | Medtr5g021610 | Medtr5g021610.1 | 8378105–8376835 | 1446 | 624 | 207 | 23.91 | 4.7 | ExCa, Nua,b |
MtGLYI-20 | Medtr5g090990 | Medtr5g090990.1 | 39642769–39640064 | 3139 | 1287 | 428 | 47.37 | 5.61 | Cha,b, Cya, Nub |
MtGLYI-21 | Medtr5g091060 | Medtr5g091060.1 | 39679453–39682352 | 3349 | 1314 | 437 | 48.36 | 5.34 | Cha,b,c |
MtGLYI-22 | Medtr6g087120 | Medtr6g087120.1 | 33502501–33497925 | 5130 | 1047 | 348 | 39.15 | 7.96 | Mta, Chb,c |
MtGLYI-23 | Medtr8g076160 | Medtr8g076160.1 | 32249509–32248727 | 1060 | 582 | 193 | 21.94 | 5.04 | ExCa,b, Cya |
MtGLYI-24 | Medtr8g102980 | Medtr8g102980.1 | 43369583–43365194 | 4842 | 1044 | 347 | 38.82 | 7.03 | Cha,b,c |
Medtr8g102980.2 | 43369583–43366886 | 4842 | 1029 | 342 | 38.18 | 7.86 | Cha,b,c | ||
MtGLYI-25 | Medtr0003s0630 | Medtr0003s0630.1 | 351938–354470 | 2533 | 603 | 200 | 23.18 | 4.86 | Nua, Cya,b |
MtGLYI-26 | Medtr0430s0010 | Medtr0430s0010.1 | 826–1190 | 365 | 258 | 85 | 9.63 | 9.30 | Cya |
MtGLYI-27 | Medtr1239s0010 | Medtr1239s0010.1 | 34–1801 | 1768 | 1681 | 560 | 62.66 | 6.24 | Cya,b |
MtGLYI-28 | Medtr1275s0010 | Medtr1275s0010.1 | 9–1946 | 1938 | 1548 | 515 | 55.66 | 8.22 | Mta, Cyb |
MtGLYI-29 | Medtr1759s0010 | Medtr1759s0010.1 | 211–1341 | 1128 | 987 | 328 | 35.34 | 9.62 | Cha, ExCb |
bp base pair; MW, molecular weight; kDa, kilo Dalton; Ch, chloroplast; Cy, cytosol; Mt, mitochondria; ExC, extra cellular; Nu, nuclear. aLocalization prediction by CELLO v.2.5 (http://cello.life.nctu.edu.tw/). bLocalization prediction by pSORT (http://www.genscript.com/wolf-psort.html). cChloroplast localization signal confirmed by ChloroP (http://www.cbs.dtu.dk/services/ChloroP/).