FIG 4.

Phylogenetic tree of S. Newport isolates constructed using BEAST. Gene groups for AMR genes detected in each genome sequence at more than 50% coverage and 75% identity using BLAST (blastn) and ARG-ANNOT are indicated in green. Antimicrobials to which each isolate is resistant are indicated in red, and intermediate resistance to an antimicrobial is indicated in orange. Plasmid replicons detected in each genome sequence using PlasmidFinder are indicated in purple. Branch lengths are reported in substitutions per site, while posterior probabilities are reported at tree nodes.