Table 2. Number of genes among the top 100 high-scoring genes, which were also confirmed by RNA-seq data.

Genes used for designing the models were not scored. The count of expressed and high-scoring genes, the genome-wide fraction of expressed genes (FPKM > 1) and p-value from the hypergeometric test are included.

Developmental stage	Count	Expression fraction	P-value
Embryo 0–2 h	56	0.397	7.13E−04*
Embryo 2–4 h	45	0.437	4.33E−01
Embryo 4–6 h	61	0.468	2.92E−03*
Embryo 6–8 h	50	0.462	2.54E−01
Embryo 10–12 h	64	0.516	7.99E−03*
Embryo 12–14 h	70	0.527	3.15E−04*
Embryo 14–16 h	71	0.552	8.37E−04*
Embryo 16–18 h	76	0.592	3.07E−04*
Embryo 18–20 h	62	0.665	8.54E−01
Embryo 20–22 h	75	0.597	9.69E−04*
Embryo 22–24 h	79	0.597	3.18E−05*
L1 stage larvae	75	0.587	4.78E−04*
L2 stage larvae	73	0.599	4.13E−03*
L3 stage larvae	89	0.691	2.32E−06*
White prepupae	77	0.646	5.15E−03*
White prepupae +12 h	74	0.678	1.09E−01
White prepupae +24 h	78	0.626	7.21E−04*
Pupae	85	0.692	2.13E−04*
Adult male eclosion +1 day	84	0.702	1.09E−03*
Adult male eclosion +5 days	85	0.708	6.88E−04*
Adult male eclosion +30 days	91	0.722	3.33E−06*
Adult female eclosion +1 day	73	0.599	4.21E−03*
Adult female eclosion +5 days	57	0.542	3.20E−01
Adult female eclosion +30 days	71	0.533	2.15E−04*

Notes.

^*Statistically significant models are indicated by superscript asterisks.