Table I.
Gene | Experiment | Type | Sequence (5′-3′) | Product size | Annealing temperature |
---|---|---|---|---|---|
RFX1 | RT-qPCR | Forward | GCAGACAGAAGTGGGGAGAA | 241 bp | 60°C |
Reverse | CAGTATACGCCTGTGTTGCC | ||||
Bisulfite sequencing in promoter region | Forward | TGTTTTTGAGGGTTTAGTTTTTTTT | 207 bp | 56°C | |
Reverse | ACAACTATTACTACCCACCCTAATTAC | ||||
Bisulfite sequencing in intron 7 | Forward | GGTGGAGGTTTGGAGTTT | 273 bp | 60°C | |
Reverse | ACAAAAACAAATATAAAAACAACA | ||||
MSP | Forward | TTTTTCGTTTTTATTTAATTTCGAC | 167 bp | 56°C | |
Reverse | ATTTCTAACTTCTTACGCTAACGTC | ||||
U-MSP | Forward | GGAGGTGTTATAGTTATGGTAGTTGT | 164 bp | 56°C | |
Reverse | CTTTTCAAAAATCTCAAAATCAAT | ||||
GAPDH | RT-qPCR | Forward | GAAGGTGAAGGTCGGAGTC | 226 bp | 60°C |
Probe | CAAGCTTCCCGTTCTCAGCC | ||||
Reverse | GAAGATGGTGATGGGATTTC |
RFX1, regulatory factor X1; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; RT-qPCR, reverse transcription-quantitative polymerase chain reaction; MSP, methylation specific PCR; U-MSP, un-methylation specific PCR.