. 2017 May 9;9(5):101. doi: 10.3390/v9050101

Table 1.

Table of all orthopoxvirus strains examined in the phylogenetic analyses including species, strain name, host (organism from which virus was extracted), year of isolation, GenBank accession number, locality data, clade within the MrBayes topologies, and original genome references. Isolates with identical symbols (^§, ^Δ, ^‡) are from the same outbreak or are otherwise linked epidemiologically.

Species	Strain	Host	Year	Accession#	Location of Origin	Clade	Reference
CPXV	UK Cat Pox 3L97	Cat	1977	KY549143	UK	A	This paper
CPXV	AUS 1999-867	Cat	1999	HQ407377	Texing, Austria	A	[27]
CPXV	GRI-90	Human	1990	X94355	Moscow, Russia	B	[45]
CPXV	FIN 2000_MAN	Human	2000	HQ420893	Tohmajärvi, Finland	B	[27]
CPXV	HumLit08/1	Human	2008	KC813493	Vilnius, Lithuania	C	[28]
CPXV	HumAac09/1 ^§	Human	2009	KC813508	Aachen, Germany	D	[28]
CPXV	RatAac09/1 ^§	Rat	2009	KC813501	Aachen, Germany		[28]
CPXV	RatGer09/1 ^§	Rat	2009	KC813503	Germering, Germany		[28]
CPXV	HumKre08/1 ^§	Human	2008	KC813512	Krefeld, Germany		[28]
CPXV	RatKre08/2 ^§	Rat	2008	KC813505	Krefeld, Germany		[28]
CPXV	Ratpox09 ^§	Rat	2009	LN864565	Marl, Germany		[46]
CPXV	HumGra07/1	Human	2007	KC813510	Graz, Austria		[28]
CPXV	GER 1998/2	human	1998	HQ420897	Eckental, Germany	E1	[27]
CPXV	Germany 91-3	Human	1991	DQ437593	Munich, Germany	E2	[47]
CPXV	FM2292	Common Vole	2011	LN864566	Baden-Wuerttemberg, Germany	E2	[46]
CPXV	MarLei07/1	Mara	2007	KC813499	Leipzig, Germany	E3	[28]
CPXV	HumLue09/1	Human	2009	KC813494	Lübeck, Germany		[28]
CPXV	GER_1990_2	Human	1990	HQ420896	Bonn, Germany		[27]
CPXV	France-01 NANCY	Human	2001	HQ420894	Nancy, France		[27]
CPXV	NOR 1995 feline	Cat	1994	KY549151	Bergen, Norway	E4	This paper
CPXV	NOR 1994_MAN	Human	1994	HQ420899	Bergen, Norway	E4	[27]
CPXV	UK 2000 K 1639	Cat	2000	KY549148	Bristol, UK	E5	This paper
CPXV	UK 2000 K 2739	Cat	2000	KY549149	Bristol, UK		This paper
CPXV	UK pox 5/wv1	Cheetah	1972	KY549144	London, UK		This paper
CPXV	UK 2000 K 4207	Cat	2000	KY549150	Bristol, UK		This paper
CPXV	UK_Brighton Red	Human	1937	AF482758	Brighton, UK		[48]
CPXV	UK 2000 K 2984	Cat	2000	HQ420900	Bristol, UK		[27]
CPXV	UK 2000 K 428	Cat	2000	KY549145	Bristol, UK		This paper
CPXV	UK 2000 K 779	Cat	2000	KY549146	Bristol, UK	E6	This paper
CPXV	UK 2000 K 780	Cat	2000	KY549147	Bristol, UK		This paper
CPXV	GER 1980-EP4	Elephant	1980	HQ420895	Hameln, Germany		[27]
CPXV	HumPad07/1	Human	2007	KC813496	Paderborn, Germany		[28]
CPXV	GER 2002 MKY	Marmoset	2002	HQ420898	Gӧttingen, Germany	E7	[27]
CPXV	BeaBer04/1	Beaver	2004	KC813491	Berlin, Germany	E8	[28]
CPXV	CatBer07/1	Cat	2007	KC813502	Berlin, Germany		[28]
CPXV	HumBer07/1	Human	2007	KC813509	Berlin, Germany		[28]
CPXV	HumMag07/1	Human	2007	KC813495	Magdeburg, Germany		[28]
CPXV	CatPot07/1	Cat	2007	KC813506	Potsdam, Germany		[28]
CPXV	Amadeus_2015	Horse	2015	LN879483	Germany		[31]
CPXV	EleGri07/1 ^Δ	Elephant	2007	KC813507	Grimmen, Germany	E9	[28]
CPXV	HumGri07/1 ^Δ	Human	2007	KC813511	Grimmen, Germany	E9	[28]
CPXV	RatHei09/1 ^‡	Rat	2009	KC813504	Heidelberg, Germany	E10	[28]
CPXV	JagKre08/1 ^‡	Jaguarundi	2008	KC813497	Krefeld, Germany		[28]
CPXV	JagKre08/2 ^‡	Jaguarundi	2008	KC813498	Krefeld, Germany		[28]
CPXV	MonKre08/4 ^‡	Mongoose	2008	KC813500	Krefeld, Germany		[28]
CPXV	HumLan08/1 ^‡	Human	2008	KC813492	Landau, Germany		[28]
CMLV	M-96	Camel	1996	NC003391	Kazakhstan	CMLV	[49]
CMLV	CMS	Camel	1970	AY009089	Iran	CMLV	[50]
ECTV	Naval	Mouse	1996	KJ563295	USA	ECTV	[51]
ECTV	Moscow	Mouse	1947	NC004105	Moscow, Russia	ECTV	[52]
MPXV	Liberia_1970	Human	1970	DQ011156	Liberia	MPXV	[53]
MPXV	Zaire-96	Human	1996	NC003310	Zaire/DRC	MPXV	[54]
TATV	Dahomey 1968	Gerbil	1968	NC008291	Dahomey, Benin	TATV	[47]
VACV	Rabbitpox Utrecht	Rabbit	1941	AY484669	Utrecht, The Netherlands	VACV	[55]
VACV	Horsepox_MNR-76	Horse	1976	DQ792504	Mongolia	VACV	[56]
VARV	Bangladesh1974	Human	1976	DQ441420	Bangladesh	VARV	[47]
VARV	Brazil1966	Human	1966	DQ441419	Brazil	VARV	[47]

CPXV: Cowpox virus; CMLV: Camelpox virus; ECTV: Ectromelia virus; MPXV: Monkeypox virus; TATV: Taterapox virus; VACV: Vaccinia virus; VARV: Variola virus.