Table 4. Over-represented motifs identified by MEMEa.
Motifs | Consensus | Frequency (%) | TF | E-value |
---|---|---|---|---|
1 | GSGDGSMWGRGGSRGGRS | 95 | MZF1 | 2.2E−088 |
2 | VSSYYYMCYCYCKCCHRS | 100 | SP1 | 6.9E−041 |
3 | YCYRSSYYCCSGSYYC | 100 | AP2 | 5.3E−019 |
4 | CCCYKCCYCHBSCYCSCB | 100 | GKLF | 3.2E−089 |
5 | CCCCGCCCCCCCCCCTCC | 100 | GC-signal | 1.2E−030 |
6 | KYCRCCAKGTTGGTCAGG | 24 | ERE half-site | 1.9E−009 |
7 | GRSCRSCDSCHBBYCC | 61 | novel | 1.8E−002 |
8 | SSSSGSGKYSGSKSSSGS | 72 | E2F | 1.4E−016 |
9 | KRSRGRGRSMSVGGCDG | 66 | ZF5 | 2.4E−007 |
10 | YVMKKBBMCYSCYKYDSY | 39 | novel | 2.6E−005 |
aThe motifs identified by MEME program on a basis of a dataset which consists of 35 experimentally confirmed ERα targets and 42 ERα target candidates from ChIP-on-chip.