Table 6. HPRT cryptic splice sites.
Legitimate splice site | Cryptic splice site | Splice variant | |
---|---|---|---|
Cryptic donor splice sites | |||
Intron | |||
1* | GTG/g1704tgagc | cag1752/gtggcg | Inclusion of 1–49 of intron 1 |
5* | GAA/g31635taagt | Aag31701/gtaagc | Inclusion of 1–67 of intron 5 |
Cryptic acceptor splice sites | |||
Exon | |||
2 | tttcag14779/A28TT | TAG32/T | Skip 28–32 of exon 2 |
4* | aactag27890/A319AT | CAG327/T | Skip 319–327 of exon 4 |
8* | ttttag40032/T533TG | CAG553/A | Skip 533–553 of exon 8 |
9* | ttatag41453/C610AT | TAG626/T | Skip 610–626 of exon 9 |
Data adapted from (26). Lowercase indicates intron sequences, uppercase indicates exon sequences, and/refers to an intron/exon boundary. Numbers in italic refer to cDNA numbering (base 1 is the A in the AUG initiation codon). All other numbers refer to genomic numbering (26).
*Indicates cryptic sites investigated in this study.