Table 2. Metadata and phenotypic antimicrobial susceptibility for individual isolates.
| Strain no. | age | date isolated | siteb | Antimicrobial compounda | Ctrl/Csc | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| gender | AMC | SAM | ATM | FEP | CAZ | CTX | IPM | MEM | AMK | GEN | TOB | TET | CIP | LVX | SXT | |||||
| MHK00504 | 11m | F | 7/10/2010 | Ku | R | R | S | S | S | S | I | S | S | S | S | R | S | S | R | ctrl |
| MHK01305 | 18yr 6m | M | 5/24/2011 | Ki | S | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK01419 | 3yr 2m | F | 6/21/2011 | Ki | S | R | S | S | S | S | S | S | S | R | I | R | S | S | R | ctrl |
| MHK01814 | 9m | M | 9/28/2011 | Mb | R | R | S | S | I | S | R | S | S | S | S | R | S | S | R | cs |
| MHK02123d | 21yr | F | 1/11/2012 | Ki | S | I | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK02126d | 1yr | M | 1/11/2012 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK02178 | 21yr | M | 1/21/2012 | Ki | R | R | S | S | S | S | I | S | S | S | S | R | S | S | R | ctrl |
| MHK02303 | 2yr 1m | F | 2/11/2012 | Ki | R | R | S | S | S | S | S | S | S | R | I | R | S | S | R | ctrl |
| MHK02499 | 1yr 3m | M | 3/29/2012 | Ki | I | R | R | R | ESBL | ESBL | S | S | S | I | S | S | S | S | R | ctrl |
| MHK02590 | 6m | M | 4/14/2012 | Mb | R | R | R | R | R | R | S | S | R | R | R | R | R | R | R | cs |
| MHK02631 | 54yr | F | 4/20/2012 | Ki | S | S | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK02678 | 1yr 10m | F | 5/1/2012 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK02690 | 9m | M | 5/4/2012 | Mb | R | R | S | S | S | S | S | S | S | S | S | I | S | S | R | cs |
| MHK02780 | 4m | F | 5/29/2012 | Ki | S | S | S | S | S | S | S | S | S | S | S | R | S | S | S | cs |
| MHK03026 | 8yr | F | 7/13/2012 | Ku | I | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04212 | 11m | M | 11/15/2013 | M1 | R | S | S | S | S | S | S | S | S | S | S | S | S | S | R | cs |
| MHK04617 | 5m | M | 11/16/2013 | Mb | I | R | S | S | S | S | S | S | S | S | S | S | S | S | R | cs |
| MHK04622 | 8m | M | 11/20/2013 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04775 | 2yr 1m | F | 2/1/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK04776 | 2yr 6m | F | 2/1/2014 | Ku | I | R | S | S | S | S | S | S | S | S | S | S | S | S | R | cs |
| MHK04777 | 51yr | M | 2/1/2014 | Ko | S | R | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04779 | 2yr 3m | M | 2/4/2014 | Ke | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04786 | 4yr | M | 2/5/2014 | Ki | I | I | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04792 | 43yr | M | 2/5/2014 | Ke | S | S | S | S | S | S | S | S | S | S | S | R | S | S | S | ctrl |
| MHK04804 | 3yr 9m | F | 2/7/2014 | Ki | S | R | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04812 | 3yr | M | 3/27/2014 | Ke | R | R | S | R | ESBL | ESBL | S | S | S | S | S | S | S | S | R | cs |
| MHK04813 | 1yr 2m | M | 3/28/2014 | Ku | I | R | S | S | S | S | S | S | S | S | S | S | S | S | R | cs |
| MHK04819 | 1yr 4m | M | 4/1/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK04821 | 2yr 3m | F | 4/2/2014 | Ke | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04822 | 2yr 11m | M | 4/3/2014 | Ki | S | R | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04834 | 19yr | M | 4/9/2014 | Ko | S | S | S | S | S | S | S | S | S | S | S | I | S | S | S | ctrl |
| MHK04838 | 4yr | F | 4/10/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04847 | 28yr | F | 4/11/2014 | Ko | S | S | S | S | S | S | S | S | S | S | S | R | S | S | S | cs |
| MHK04864 | 32yr | F | 4/17/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | I | S | S | S | ctrl |
| MHK04872 | 22yr | F | 4/18/2014 | Ku | I | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04885 | 2yr 5m | M | 4/24/2014 | Ke | S | S | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04900 | 3yr 5m | F | 4/28/2014 | Ke | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK04904 | 22yr | F | 4/29/2014 | Ki | S | I | S | S | S | S | S | S | S | I | S | S | S | S | R | cs |
| MHK04908 | 1yr 3m | M | 4/30/2014 | Ku | S | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04919 | 3yr | M | 5/6/2014 | Ki | I | R | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK04922 | 3yr | F | 5/7/2014 | Ki | R | R | R | R | R | R | I | S | R | R | R | S | S | I | R | ctrl |
| MHK04923 | 24yr | M | 5/7/2014 | Ki | S | S | S | S | S | S | S | R | S | S | S | S | S | S | R | ctrl |
| MHK04926 | 31yr | F | 5/7/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK04928 | 5yr | F | 5/9/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK04930 | 28yr | M | 5/9/2014 | M1 | R | R | R | R | ESBL | ESBL | S | S | S | R | R | S | S | S | R | ctrl |
| MHK04941 | 1yr 8m | M | 5/14/2014 | M1 | R | S | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04943 | 28yr | F | 5/15/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04946 | 17yr | F | 5/16/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK04947 | 36yr | F | 5/16/2014 | Ko | R | R | S | S | S | S | S | S | S | S | S | I | S | S | R | cs |
| MHK04948 | 38yr | M | 5/16/2014 | Ko | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK04957 | 37yr | F | 5/17/2014 | M1 | S | S | S | S | S | I | S | S | S | S | S | I | S | S | S | cs |
| MHK04960 | 8m | M | 5/20/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK04967 | 15yr | M | 5/22/2014 | M1 | I | I | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04980 | 30yr | M | 5/23/2014 | M1 | I | I | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK04983 | 1yr 1m | M | 5/24/2014 | Ku | I | R | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK04984 | 6m | M | 5/24/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK05010 | 8yr | F | 5/31/2014 | Ki | I | R | R | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK05013a | 35yr | F | 5/31/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK05013b | 35yr | F | 5/31/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK05014a | 32yr | M | 5/31/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK05014bd | 32yr | M | 5/31/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK05017 | 52yr | F | 6/5/2014 | Ko | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | cs |
| MHK05018 | 32yr | M | 6/5/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK05018-1b | 32yr | M | 6/5/2014 | M1 | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK05021 | 7yr | M | 6/5/2014 | Ki | S | R | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| MHK05027 | 7yr | M | 6/6/2014 | Ki | R | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK05028 | 5yr | F | 6/6/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| MHK05042 | 2yr 9m | M | 6/11/2014 | Ki | R | I | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK05046 | 4yr 10m | M | 6/12/2014 | Ki | S | S | S | S | S | I | S | S | S | S | S | S | S | S | S | cs |
| MHK05068 | 6yr | M | 6/20/2014 | Ki | R | R | R | R | ESBL | ESBL | S | S | S | R | R | S | I | S | R | cs |
| MHK05070 | 1yr | F | 6/21/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | R | S | S | R | ctrl |
| MHK05072 | 4yr 6m | F | 6/21/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| MHK05080 | 9yr | M | 6/27/2015 | Ki | S | S | S | S | S | S | S | S | S | S | S | I | S | S | S | cs |
| MHK05084 | 5yr | F | 6/28/2014 | Ku | R | I | S | S | S | S | S | S | S | S | S | R | S | S | S | cs |
| MHK05090 | 4yr 6m | M | 7/2/2014 | Ku | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| MHK05091 | 5yr 10m | M | 7/2/2014 | Ku | R | R | R | R | ESBL | ESBL | S | S | S | S | S | R | S | S | R | cs |
| MHK05094 | 23yr | F | 7/4/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
| NTS01697 | 4yr 1m | M | 6/12/2014 | Ki | R | R | R | R | ESBL | ESBL | S | I | S | R | R | S | S | R | R | cs |
| NTS01699 | 5yr 5m | M | 6/12/2014 | Mg | S | S | S | S | S | S | S | S | S | S | S | I | S | S | S | cs |
| NTS01703 | 2yr 8m | F | 6/13/2014 | Hy | S | S | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| NTS01705 | 7m | F | 6/13/2014 | Hy | S | R | S | R | S | S | S | S | S | S | S | S | S | S | R | cs |
| NTS01707 | 4yr 9m | F | 6/13/2014 | Mg | S | S | S | S | S | S | S | S | S | S | S | R | S | S | S | ctrl |
| NTS01708 | 2yr 9m | M | 6/14/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| NTS01732 | 2yr 10m | F | 6/25/2014 | Hy | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| NTS01745 | 11m | F | 7/2/2014 | Ki | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| NTS01747 | 5yr | M | 7/3/2014 | Hy | S | S | S | S | S | S | S | S | S | S | S | S | S | S | R | ctrl |
| NTS01749 | 4yr 3m | M | 7/3/2014 | Mg | S | S | S | S | S | S | S | S | S | S | S | I | S | S | S | cs |
| NTS01755 | 3yr 1m | F | 7/5/2014 | Ki | I | R | S | S | S | S | S | S | S | S | S | R | S | S | R | cs |
| NTS01793 | 3yr 2m | M | 8/2/2014 | Hy | S | S | I | S | S | S | S | S | S | S | S | S | S | S | S | cs |
| NTS01936 | 5yr 6m | M | 6/26/2014 | Mg | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | ctrl |
aAntimicrobial compounds are grouped together according to categories used to define MDR per Magiorakos [22]. AMC–amoxicillin/clavulanate; SAM–ampicillin/sulbactam; ATM–aztreonam; FEP–cefepime; CAZ–ceftazidime; CTX–cefotaxime; IMP–imipenem; MEM–meropenem; AMK–amikacin; GEN–gentamicin; TOB–tobramycin; TET–tetracycline; CIP–ciprofloxacin; LVX–levofloxacin; SXT–trimethoprim/sulfamethoxazole; S–sensitive; I–intermediate; R–resistant. ESBL–Extended-spectrum β-lactamase
bCollection site: Hy–Homabay; Ke–Kericho; Ki–Kisii; Ko–Kombewa; Ku–Kisumu; Mb–Mbagathi; Mg–Migori; M1 –Moi Barracks at Eldoret
cctrl–healthy control; cs–case of acute diarrheal illness
dK. oxytoca