TABLE 3.
Alignment of sigV-like consensus elements
| Name (gene) | Candidate promoter region | 5′ UTRa |
|---|---|---|
| −35−10+1 | ||
| EF3180 (sigV) | AAAGTTGAAACTTTTTATGCTTGTGATTCGTCTATATAAGTGTAC | 36 |
| EF1843 (pgdA) | AAAATTGAAACTTTTTGGTCCTCAAATTCGTCTATAACTAATAGG | 81 |
| EF0159 | CTCTTTGAAACAGTTGATGATACAGAAGCGTCCGTTATGGAAAAC | 40 |
| EF1934b | GAAGATGAAACCAATCAATTGAATGA-ACGTCTAGAGGAAATGAA | 89 |
| EF0315 | AAGATTGAAACGTTAAGAGATGCAG-TACGTCACGAAAGTGCAAA | 226 |
| EF0315 | TGTATTGAAACAAAAAGAGC--CTACCTCGTCCGCCAACGAAGTA | 59 |
| Consensus | -----TGAAAC-----------------CGTC---------- |
a
The length of the 5′ untranslated region (UTR) is measured from the end of the −10 motif to the start codon of the indicated gene. The determined TSSs (+1) are represented by underlined bold letters.
b
See Fig. 9B for a characterization of the TSS of EF1934.