. 2004 Oct 22;5(11):R90. doi: 10.1186/gb-2004-5-11-r90

Table 1.

Candidate binding sites for the biotin repressor BirA

Gene		Site	Position*	Score
Desulfuromonas sp.
387978	bioW	`aTGTcAACC-[N₁₄]-GGTTgACAg`	-63	8.61
390011	bioB	`acGTcAACC-[N₁₄]-GGTTgACAA`	-94	8.13

Geobacter sulfurreducens PCA
381880	bioB	`TTGTcAACC-[N₁₄]-aGTTgACAA`	-78	8.50
382941	bioF	`TTGTcAACC-[N₁₄]-GGTTgACgA`	-182	8.29

Geobacter metallireducens
377241	bioB	`TTGTtAACC-[N₁₄]-aGTTgACAA`	-76	7.81
377542	bioF	`TTGTcAACC-[N₁₄]-GGTTgACgA`	-64	8.29

Desulfovibrio vulgaris
208055	bioB	`TTGTAAACC-[N₁₅]-cGTTgACAg`	6	8.39

Desulfovibrio desulfuricans G20
394249	bioB	`TTGTAAACC-[N₁₅]-aGTTgACAA`	-119	8.60

Desulfotalea psychrophila
425025	bioB	`TTGTAAAtt-[N₁₅]-ccaTTACAg`	233	6.19

*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.