Table 4.
Candidate binding sites for the nickel regulator NikR
| Gene | Operon | Function | Site | Orientation | Position* | Score |
| Geobacter sulfurreducens PCA | ||||||
| 381565 | nik(MN)QO* | Nickel transporter | GTGTTAC-[N14]-GTgACAC | →← | -183 | 5.00 |
| Geobacter metallireducens | ||||||
| 379930 | nik(MN)QO* | Nickel transporter | GTGTTAC-[N13]-GTAACAC | →← | -63 | 5.22 |
| Desulfuromonas species | ||||||
| 387207 | nikQO* | Nickel transporter | GTGccAC-[N13]-GTAACAC | →← | -41 | 4.67 |
| Desulfovibrio vulgaris | ||||||
| 206492 | nikMQO* | Nickel transporter | GTGTTAt-[N13]-GTAACAC | →← | -120 | 5.00 |
| 208275 | nikK* | Additional component of Ni transporter | GTgACAC-[N13]-GTGTaAC | ←→ | -84 | 4.49 |
| Desulfovibrio desulfuricans | ||||||
| 395510 | nikKMLQO* | Nickel transporter | GTGTTAt-[N13]-GTAACAC | →← | -104 | 5.00 |
| 394565 | hydAB | Periplasmic Fe-only hydrogenase | GTaTTAC-[N13]-GTAACAC | →← | -83 | 4.67 |
| Desulfotalea psychrophila | ||||||
| 422915 | nikMLKQO* | Nickel transporter | GTAACAC-[N13]-GTGTTAC | ←→ | -20 | 5.22 |
| 422176 | 422176-177 | ? | GTAACAC-[N13]-GTGTTAC | ←→ | -197 | 5.22 |
| GTAACAC-[N13]-GTGTTAC | ←→ | -124 | 5.22 | |||
*Position relative to the start of translation.