Table 7.
Candidate binding sites for the peroxide-responsive regulators PerR
| Gene | Operon | Function | Site | Position* | Score |
| Desulfovibrio vulgaris | |||||
| 207805 | rbr2 | Rubrerythrin | AATAGGAATCGTTCCTGTT | -46 | 5.97 |
| 208612 | perR-rbr-rdl | PerR-like repressor, rubrerythrin, rubredoxin | AtCAGTAATtGTTACTGgT | -36 | 5.50 |
| 207732 | ahpC | Alkyl hydroperoxide reductase C | cACAGGAATGATTCCTGTT | -116 | 5.40 |
| 206199 | ? | AtCAGTAATaGTTAtTGTT | -124 | 5.39 | |
| Desulfovibrio desulfuricans | |||||
| 395420 | rbr2 | Rubrerythrin | AATAGGAATCGTTACTGaT | -76 | 5.91 |
| 395549 | ? | AATAaGAATtGTTACTATT | -134 | 5.45 | |
| 393457 | perR | PerR-like repressor | ttTAGGAATGGTTAtTATT | -41 | 5.23 |
| Desulfotalea psychrophila | |||||
| 423938 | roo1-roo2 | Rubredoxin-oxygen oxidoreductase | GTTAATGATAATCATTAct | -203 | 6.25 |
| 425393 | perR | PerR-like repressor | GaTAATttTTATtATTAAC | -74 | 5.97 |
| Geobacter sulfurreducens | |||||
| 383613 | perR-rbr*-roo | Rubredoxin-oxygen oxidoreductase | AaTGCAATAAAATACCAAT | -99 | 6 |
| Geobacter metallireducens | |||||
| 378323 | perR2-rbr*-roo | Rubredoxin-oxygen oxidoreductase | ATTGCAATAAAgTACCAAc | -99 | 5.79 |
| Desulfuromonas species | |||||
| 387528 | katG1 | Catalase | GGTcTTGACAATtCC | -75 | 5.55 |
| 387530 | perR31 | PerR-like repressor | GaTATTGACAAacCC | -96 | 5.29 |
| Geobacter sulfurreducens | |||||
| 383124 | hsc-grx-ccpA-rbr | Cytochrome peroxidase, glutaredoxin, rubrerythrin | TTGCGCATTCcATtCGTAA | -32 | 5.84 |
| Desulfuromonas species | |||||
| 390120 | perR1-rbr | PerR-like repressor, rubrerythrin | TTGCGCgTTAAAacaGTAA | -91 | 5.54 |
*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.