Table 1.
Genetic diversity and demographic parameters for the 23 populations of Eugenia dysenterica for combined cpDNA data and for ITS.
| Population | N | cpDNA |
ITS |
Combined cpDNA and ITS nrDNA |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| k | h | π | π (SD) | k | h | π | π (SD) | θ | θ (95 % interval) | Ne | Ne (95 % interval) | g | g (95 % interval) | ||
| North-North-east | |||||||||||||||
| GIPI | 16 | 1 | 0·0000 | 0·0000 | − | 2 | 0·3250 | 0·0007 | 0·0009 | 0·0000362 | 0·000019–0·000506 | 14·047 | 7·373–196·352 | 863·5559 | −411·8888 to 948·7377 |
| PNTO | 16 | 3 | 0·3417 | 0·0002 | 0·0002 | 3 | 0·4250 | 0·0012 | 0·0012 | 0·0002920 | 0·000124–0·001434 | 113·310 | 48·118–556·461 | 639·9023 | −419·4743 to 954·7830 |
| SVTO | 13 | 3 | 0·6923 | 0·0027 | 0·0016 | 1 | 0·0000 | 0·0000 | − | 0·0001980 | 0·000029–0·000543 | 76·834 | 11·253–210·710 | 623·0991 | −422·3260 to 946·8101 |
| BABA | 16 | 2 | 0·2333 | 0·0001 | 0·0002 | 2 | 0·2333 | 0·0010 | 0·0011 | 0·0003080 | 0·000032–0·001010 | 119·519 | 12·418–391·929 | 242·4670 | −423·4413 to 935·2922 |
| RVBA | 12 | 1 | 0·0000 | 0·0000 | − | 3 | 0·6667 | 0·0024 | 0·0019 | 0·0002590 | 0·000148–0·000311 | 100·504 | 57·431–120·683 | 883·5572 | −415·9880 to 965·4857 |
| Central-Central West | |||||||||||||||
| NIGO | 14 | 6 | 0·6044 | 0·0006 | 0·0005 | 2 | 0·4945 | 0·0011 | 0·0011 | 0·0005410 | 0·000278–0·001770 | 209·934 | 107·877–686·845 | 705·3689 | −416·4996 to 953·7907 |
| VBGO | 14 | 4 | 0·6703 | 0·0009 | 0·0006 | 2 | 0·2637 | 0·0006 | 0·0008 | 0·0006370 | 0·000187–0·001271 | 247·187 | 72·565–493·209 | 387·6548 | −416·3308 to 943·4803 |
| MMGO | 14 | 3 | 0·6044 | 0·0004 | 0·0004 | 4 | 0·5824 | 0·0021 | 0·0017 | 0·0012940 | 0·000382–0·002367 | 502·134 | 148·234–918·510 | 877·6107 | −408·9587 to 966·3562 |
| DIGO | 14 | 4 | 0·6593 | 0·0006 | 0·0005 | 3 | 0·5824 | 0·0025 | 0·0020 | 0·0003550 | 0·000170–0·001037 | 137·757 | 65·968–402·406 | 581·2074 | −418·0161 to 956·9668 |
| MUGO | 13 | 3 | 0·5641 | 0·0020 | 0·0012 | 4 | 0·6026 | 0·0019 | 0·0016 | 0·0005210 | 0·000129–0·001375 | 202·173 | 50·058–533·566 | 276·9472 | −435·1879 to 941·9162 |
| STGO | 16 | 3 | 0·2417 | 0·0002 | 0·0002 | 3 | 0·2417 | 0·0006 | 0·0007 | 0·0003140 | 0·000092–0·000662 | 121·847 | 35·700–256·888 | 836·3442 | −415·9074 to 943·8014 |
| FIGO | 13 | 6 | 0·8205 | 0·0011 | 0·0007 | 2 | 0·2821 | 0·0006 | 0·0008 | 0·0008090 | 0·000215–0·001703 | 313·931 | 83·430–660·846 | 732·0306 | −432·1317 to 954·6408 |
| BGMT | 13 | 2 | 0·2821 | 0·0001 | 0·0002 | 3 | 0·5641 | 0·0034 | 0·0025 | 0·0002160 | 0·000050–0·001008 | 83·818 | 19·402–391·153 | 291·2787 | −420·1152 to 939·9433 |
| BSGO | 15 | 1 | 0·0000 | 0·0000 | − | 2 | 0·5143 | 0·0012 | 0·0012 | 0·0001700 | 0·000074–0·000382 | 65·968 | 28·716–148·234 | 553·7289 | −418·6677 to 947·1393 |
| SCGO | 13 | 1 | 0·0000 | 0·0000 | − | 3 | 0·6154 | 0·0036 | 0·0026 | 0·0003490 | 0·000167–0·000449 | 135·429 | 64·804–174·234 | 869·0465 | −421·7687 to 957·5895 |
| South-east | |||||||||||||||
| CTGO | 15 | 2 | 0·4762 | 0·0005 | 0·0004 | 1 | 0·0000 | 0·0000 | − | 0·0000897 | 0·000017–0·000248 | 34·808 | 6·597–96·236 | 813·2421 | −427·2343 to 943·2240 |
| CLGO | 16 | 1 | 0·0000 | 0·0000 | − | 2 | 0·2333 | 0·0005 | 0·0007 | 0·0001710 | 0·000030–0·000277 | 66·356 | 11·641–107·489 | 697·5346 | −415·8263 to 952·0951 |
| PTMG | 15 | 1 | 0·0000 | 0·0000 | − | 3 | 0·5905 | 0·0017 | 0·0015 | 0·0001230 | 0·000113–0·000232 | 47·730 | 43·849–90·027 | 392·2598 | −432·0983 to 944·6149 |
| BRMG | 16 | 2 | 0·3417 | 0·0003 | 0·0003 | 1 | 0·0000 | 0·0000 | − | 0·0000916 | 0·000028–0·000535 | 35·545 | 10·865–207·606 | 786·5530 | −430·9998 to 952·9603 |
| PIMG | 12 | 1 | 0·0000 | 0·0000 | − | 2 | 0·1667 | 0·0007 | 0·0009 | 0·0001750 | 0·000041–0·000642 | 67·908 | 15·910–249·127 | 785·3443 | −428·1085 to 956·2967 |
| CRMG | 16 | 1 | 0·0000 | 0·0000 | − | 1 | 0·0000 | 0·0000 | − | 0·0000258 | 0·000013–0·000174 | 10·012 | 5·045–67·520 | 279·6221 | −433·1575 to 945·4802 |
| LZMG | 16 | 1 | 0·0000 | 0·0000 | − | 2 | 0·3250 | 0·0007 | 0·0009 | 0·0000400 | 0·000014–0·000404 | 15·522 | 5·433–156·771 | 519·4392 | −435·1287 to 947·2409 |
| BMMG | 15 | 1 | 0·0000 | 0·0000 | − | 2 | 0·1333 | 0·0006 | 0·0008 | 0·0001900 | 0·000123–0·000642 | 73·729 | 47·730–249·127 | 859·3399 | −409·8901 to 959·7484 |
| Mean | 14·40 | 2·30 | 0·2749 | 0·0003 | 0·0005 | 2·35 | 0·3546 | 0·0013 | 0·0013 | 0·000334 | 129·5906 | 618·5289 | |||
| SD | 1·63 | 0·2929 | 0·88 | 0·2287 | 0·000306 | 118·8403 | 232·3967 | ||||||||
| Overall | 333 | 19 | 0·6795 | 0·0010 | 0·0006 | 15 | 0·5640 | 0·0019 | 0·0015 | 0·003349 | 0·002418–0·005113 | 2250·019402 | 75·1919–167·9388 | 507·9428 | −118·4123 to 949·5776 |
N, number of individuals sampled; k, number of haplotypes; h, haplotype diversity; π, nucleotide diversity; SD, standard deviation; θ, coalescent parameter; Ne, effective population size; g, exponential growth parameter.