Table 2.
Relative abundance of nineteen bacterial core phyla present in rhizosphere bacterial community determined by 16S sequencing
| Core phylum | Relative abundance (%) in Control treatment | Relative abundance (%) in PTS-394 treatment | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 d | 3 d | 7 d | 9 d | 14 d | 1 d | 3 d | 7 d | 9 d | 14 d | |
| Proteobacteria | 37.94 | 38.43 | 40.11 | 37.13 | 41.58 | 36.56 | 39.18 | 38.29 | 41.37 | 39.22 |
| Bacteroidetes | 13.85 | 13.36 | 12.24 | 14.26 | 11.19 | 11.48 | 12.27 | 11.30 | 11.56 | 12.45 |
| Actinobacteria | 9.70 | 9.43 | 9.73 | 11.96 | 10.67 | 7.92 | 7.84 | 11.20 | 8.85 | 8.52 |
| Chloroflexi | 8.08 | 8.36 | 8.42 | 7.72 | 6.01 | 5.96 | 6.46 | 7.82 | 6.54 | 7.97 |
| Acidobacteria | 5.70 | 7.17 | 6.77 | 6.79 | 5.77 | 5.89 | 7.65 | 6.19 | 7.10 | 6.27 |
| Gemmatimonadetes | 6.12 | 5.28 | 5.38 | 4.37 | 5.36 | 5.83 | 6.01 | 6.12 | 6.59 | 6.29 |
| Firmicutes | 2.52 | 2.78 | 2.49 | 2.81 | 3.92 | 13.78 | 6.68 | 3.85 | 3.58 | 3.29 |
| Planctomycetes | 5.80 | 5.21 | 5.18 | 4.91 | 3.93 | 3.58 | 4.25 | 4.66 | 4.22 | 3.05 |
| Cyanobacteria | 0.58 | 0.50 | 0.44 | 0.87 | 0.86 | 0.45 | 0.47 | 0.55 | 0.64 | 1.18 |
| Verrucomicrobia | 0.39 | 0.49 | 0.49 | 1.06 | 0.84 | 0.46 | 0.40 | 0.50 | 0.59 | 0.56 |
| Nitrospirae | 0.50 | 0.83 | 0.51 | 0.72 | 0.47 | 0.43 | 0.58 | 0.42 | 0.61 | 0.48 |
| Chlorobia | 0.48 | 0.40 | 0.41 | 0.28 | 0.32 | 0.36 | 0.40 | 0.55 | 0.51 | 1.09 |
| Deinococcus-Thermus | 0.35 | 0.55 | 0.32 | 0.30 | 0.29 | 0.30 | 0.35 | 0.36 | 0.42 | 0.33 |
| Fusobacteria | 0.42 | 0.53 | 0.39 | 0.47 | 0.21 | 0.33 | 0.28 | 0.24 | 0.26 | 0.21 |
| Armatimonadetes | 0.28 | 0.29 | 0.28 | 0.24 | 0.43 | 0.22 | 0.30 | 0.37 | 0.35 | 0.21 |
| Fibrobacteres | 0.07 | 0.08 | 0.09 | 0.09 | 0.18 | 0.05 | 0.07 | 0.09 | 0.09 | 0.31 |
| Elusimicrobia | 0.04 | 0.05 | 0.04 | 0.09 | 0.15 | 0.03 | 0.08 | 0.06 | 0.06 | 0.05 |
| Thermotogae | 0.05 | 0.04 | 0.05 | 0.04 | 0.02 | 0.04 | 0.01 | 0.04 | 0.01 | 0.03 |
| Spirochaetes | 0.03 | 0.03 | 0.05 | 0.01 | 0.02 | 0.04 | 0.03 | 0.03 | 0.01 | 0.02 |
The assay was performed 1, 3, 7, 9, and 14 days after inoculation with PTS-394. Control experiments without PTS-394 were performed at same time points