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Best performing substitution matrices of the PFASUM Search Matrices and Standard Search Matrices sets for the three test scenarios
| Database | Matrix | Gap parameters | Coverage |
|---|---|---|---|
| ASTRAL20 | VTML200 | -14/-1 | 0.1598 |
| PFASUM60 | -16/-1 | 0.1706 | |
| ASTRAL40 | VTML200 | -14/-1 | 0.4392 |
| PFASUM43 | -13/-1 | 0.4448 | |
| ASTRAL70 | VTML200 | -9/-2 | 0.5459 |
| PFASUM31 | -13/-2 | 0.5508 |
