Table 4.
C. ruf | splicing | max | >1-node | max | avg | D. mel | unique | >1-hit | max | mem | |
---|---|---|---|---|---|---|---|---|---|---|---|
k_c | graphs | length | N50 | graphs | nodes | nodes | hits | hits | graphs | hits | (GB) |
31_50 | 67945 | 29763 | 1482 | 20900 | 2066 | 33 | 17516 | 9246 | 1029 | 15 | 13 |
31_100 | 52099 | 27855 | 1651 | 16790 | 2786 | 27 | 16237 | 9090 | 844 | 38 | 10 |
31_200 | 41872 | 35802 | 1717 | 13318 | 2648 | 21 | 15013 | 8776 | 624 | 68 | 9 |
35_50 | 66381 | 55047 | 1600 | 20465 | 5299 | 33 | 16470 | 9235 | 994 | 59 | 13 |
35_100 | 53120 | 34347 | 1686 | 16529 | 1398 | 26 | 15965 | 9062 | 769 | 14 | 10 |
35_200 | 41421 | 35802 | 1769 | 13159 | 4076 | 21 | 14693 | 8723 | 582 | 76 | 9 |
Max length denotes the length (in nucleotides) of the longest path over all splicing graphs. >1-node graphs denotes the number of splicing graphs with non-linear structures. Max nodes denotes the maximum number of nodes in a splicing graph. Avg nodes denotes the average number of nodes in splicing graphs with non-linear structures. >1-hit graphs denotes the number of splicing graphs that have BLAST hits to more than one gene in D. melanogaster. Max hits denotes the maximum number of different genes that have BLAST hits to a splicing graph. Other notations are the same as in Table 2 except that translated BLAST search to D. melanogaster is performed