Table 4.

Selection of candidate genes identified by the promoter model. The whole list one can find in Additional files.

TNFRSF14 tumor necrosis factor receptor superfamily TNFAIP6 tumor necrosis factor, alpha-induced protein 6 PPP3CA protein phosphatase 3 (calcineurin A) NLI-IF nuclear LIM interactor-interacting factor WISP1 WNT1 inducible signaling pathway protein 1 IL8 interleukin 8 TFPI2 tissue factor pathway inhibitor 2 DEFB2 defensin, beta 2 POU2F1 POU domain, class 2, transcription factor 1 MAP2K1IP1 mitogen-activated protein kinase kinase 1 interacting protein 1 CSF2 colony stimulating factor 2 (granulocyte-macrophage) TAF2F TATA box binding protein (TBP)-associated factor RNA polymerase II, F, 55 kD ABT1 TATA-binding protein-binding protein CALN1 calneuron 1 TRAF1 TNF receptor-associated factor 1 FPGS folylpolyglutamate synthase RENT2 regulator of nonsense transcripts 2 CYP26A1 cytochrome P450, subfamily XXVIA EHF ets homologous factor, MAP3K11 mitogen-activated prot. kinase kinase kinase 11 IRAK-M interleukin-1 receptor-associated kinase M ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha HSY11339 GalNAc alpha-2, 6-sialyltransferase I, long form

HCNGP transcriptional regulator protein CYP4F11 cytochrome P450, subfamily IVF IRF3 interferonregulatory factor 3 ICAM3 intercellular adhesion molecule 3 PPARA peroxisome proliferative activated receptor, alpha IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma ELK1 ELK1, member of ETS oncogene family STK31 serine/threonine kinase 31 SERPING1 serine (or cysteine) proteinase inhibitor GPR4 G protein-coupled receptor 4 RAB5B RAB5B, member RAS oncogene family RAB7 RAB7, member RAS oncogene family NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta CEBPE CCAAT/enhancer binding protein (C/EBP), ε ELK1 ELK1, member of ETS oncogene family EHF ets homologous factor 15 Zinc finger proteins small inducible cytokine subfamily A (Cys-Cys), members 5,11, 20 and 23 Interleukins: IL1, IL1delta, IL8, IL12A, IL12B, IL13, IL23,