Table 1.
Characteristics of RH1 MAG 20 (DA052) and RH2 MAG 17b (KF-JG30-18).
| RH1 MAG20 (DA052) | RH2 MAG 17b (KF-JG30-18) | |
|---|---|---|
| Total length [bp] | 4,885,294 | 2,798,462 |
| No. of recruited reads | 404,720 406,649 |
254,272 254,736 |
| Coverage | 18 | 18 |
| No. contigs | 760 | 169 |
| N50 [bp] | 58,735 | 25,655 |
| GC content [%] | 59 | 58 |
| Completeness [%] | 93.97 | 89.39 |
| Contamination [%] | 5.15 | 2.14 |
| Classification* | Nearly complete genome with medium contamination | Substantial genome with low contamination |
| No. of coding genes | 5,311 | 2,822 |
| No. of rRNA operons | 1 | 1 |
| No. of tRNAs | 44 | 35 |
| Mobile elements** | 29 | 3 |
| CRISPR arrays | – | 2 |
| No. of encoded Czc efflux pumps | 29 | 11 |
| No. of encoded Acriflavine resistance proteins | 5 | 6 |
Recruited reads refer to the number of reads incorporated during the assembly of respective contigs. Numbers represent forward and reverse reads. Coverage was determined by determining the average coverage of genome bin contigs. Genome completeness and contamination have been assessed using CHECKM (Parks et al., 2015). The number of coding genes, rRNA operons, tRNAs, mobile elements, CRISPR/CAS repeats and repeat regions is given based on genome annotations done with PROKKA (v. 1.11) (Seemann, 2014) and RAST (v. 2.0) (Aziz et al., 2008; Overbeek et al., 2014) followed by manual refining.
*
According to Parks et al. (2015);
**
transposons and insertion sequences.