Table 1.
Condition | Time (h) | Total Reads | bACE=1 | cACE>1 | % Overall alignment | |||
---|---|---|---|---|---|---|---|---|
Paired-end | TAD | TFH | TAD | TFH | TAD | TFH | ||
0 | 20,631,843 | 21.9 | 60.9 | 67.1 | 21.5 | 92.9 | 89.7 | |
Control fruits | 1 | 15,265,622 | 19.5 | 60.7 | 66.8 | 21.3 | 93.4 | 91 |
6/9 | 16,360,548 | 18.3 | 60.4 | 67.1 | 19.4 | 92.4 | 88.8 | |
24 | 21,012,239 | 17 | 64.6 | 71.1 | 17.5 | 94.1 | 90.4 | |
Inoculated (P) | 0 | 26,558,994 | 18.6 | 62.4 | 71 | 19.5 | 94 | 89.1 |
1 | 40,574,501 | 16.9 | 61.2 | 68 | 17.4 | 92.9 | 88.9 | |
6/9 | 18,767,327 | 17.9 | 61.7 | 70 | 19.7 | 94.4 | 90 | |
24 | 21,095,442 | 17.6 | 63.2 | 71.8 | 19.6 | 94.6 | 90.4 | |
Chitosan treatment (Q) | 0 | 16,596,262 | 17.2 | 70.7 | 69.9 | 10.3 | 94.5 | 90.9 |
1 | 17,946,164 | 18.2 | 58.5 | 64.6 | 17.4 | 91.2 | 86.9 | |
6/9 | 15,299,619 | 20.8 | 60.8 | 68 | 21.3 | 93.2 | 89.2 | |
24 | 13,715,619 | 19.7 | 60.4 | 67.7 | 19.4 | 92.7 | 87.8 | |
Chitosan treatment and inoculated (QP) | 0 | 15,457,171 | 17.3 | 61.3 | 68.4 | 17.7 | 92.9 | 88.4 |
1 | 16,702,260 | 19 | 61.4 | 67.4 | 18.8 | 92.7 | 88.6 | |
6/9 | 18,244,858 | 19.6 | 61.6 | 70.3 | 21.1 | 93.8 | 89 | |
24 | 18,901,106 | 14.1 | 63.7 | 72.8 | 13.5 | 90.4 | 84.4 |
Values of ACE = 1, ACE > 1 and overall alignment represent the percentage of alignment using Bowtie2 program, P < 0.05.
Aligned concordantly exactly 1 time.
Aligned concordantly >1 times.