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Categories of recombinant genomes and localization of recombination junctions
| Localization of recombination junctions (nt) | No. of recombinant genomes identified by PCR using:
|
|||
|---|---|---|---|---|
| Consensus primers
|
Genotype-specific primers
|
|||
| I-IIb | IIb-I | I-IIb | IIb-I | |
| 1071-1085 | 1 | 0 | 0 | 0 |
| 1087-1102 | 0 | 1 | 2 | 0 |
| 1110-1125 | 0 | 0 | 1 | 1 |
| 1134-1148 | 1 | 1 | 1 | 2 |
| 1172-1184 | 0 | 0 | 1 | 1 |
| 1186-1207 | 1 | 1 | 3 | 4 |
| 1211-1222 | 0 | 0 | 2 | 2 |
